Hostname: page-component-77c89778f8-swr86 Total loading time: 0 Render date: 2024-07-19T01:07:43.513Z Has data issue: false hasContentIssue false

Isolation and characterization of fifteen microsatellite loci from the redclaw crayfish, Cherax quadricarinatus

Published online by Cambridge University Press:  19 July 2010

Yannan Xie
Affiliation:
School of Life Science, East China Normal University, Shanghai 200062, China
Lin He
Affiliation:
School of Life Science, East China Normal University, Shanghai 200062, China
Jiangling Sun
Affiliation:
School of Life Science, East China Normal University, Shanghai 200062, China
Lili Chen
Affiliation:
School of Life Science, East China Normal University, Shanghai 200062, China
Yunlong Zhao
Affiliation:
School of Life Science, East China Normal University, Shanghai 200062, China
Yaping Wang
Affiliation:
Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China
Qun Wang*
Affiliation:
School of Life Science, East China Normal University, Shanghai 200062, China
*
b Corresponding author: qun_300@hotmail.com
Get access

Abstract

The redclaw crayfish (Cherax quadricarinatus) is a freshwater crayfish species endemic to northern Australia and Papua New Guinea that is the focus of a growing culture industry in number of regions around the world. Here we isolated and characterized 15 microsatellite loci from Cherax quadricarinatus and tested variability of the loci in 66 unrelated cultured individuals. Thirteen of 15 microsatellite loci were polymorphic. Number of alleles per locus ranged from two to seven while observed and expected heterozygosities ranged from 0.172 to 0.985 and from 0.373 to 0.778, respectively. Eleven loci conformed to Hardy–Weinberg equilibrium in the sampled population. These microsatellite loci developed here provide an important resource for studying genetic diversity and population structure in redclaw crayfish and potentially in other related species.

Type
Note
Copyright
© EDP Sciences, IFREMER, IRD 2010

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Austin, C., 1996, Systematics of the freshwater crayfish genus Cherax in northern and eastern Australia: Electrophoretic and morphological variation. Aust. J. Zool. 44, 259296.CrossRefGoogle Scholar
Baker, N., Byrne, K., Moore, S., Mather, P., 2000, Characterization of microsatellite loci in the redclaw crayfish, Cherax quadricarinatus . Mol. Ecol. 9, 494495.CrossRefGoogle ScholarPubMed
Baker, N., De Bruyn, M., Mather, P.B., 2008, Patterns of molecular diversity in wild stocks of the redclaw crayfish (Cherax quadricarinatus) from northern Australia and Papua New Guinea: impacts of Plio-Pleistocene landscape evolution. Freshw. Biol. 53, 15921605.CrossRefGoogle Scholar
Botstein, D., White, R.L., Skolnick, M., Davis, R.W., 1980, Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet. 32, 314331.Google ScholarPubMed
Busack, C., 1988, Electrophoretic variation in the red swamp and white river crayfish. Aquaculture 69, 211126.CrossRefGoogle Scholar
Gardner, M.G., Cooper, S.J.B., Bull, C.M., Grant, W.N., 1999, Isolation of microsatellite loci from a social lizard, Egernia stokesii, using a modified enrichment procedure. J. Hered. 90, 301304.CrossRefGoogle Scholar
Hughes, C.R., Queller, D.C., 1993, Detection of highly polymorphic microsatellite loci in a species with little allozyme polymorphism. Mol. Ecol. 2, 131137.CrossRefGoogle Scholar
Raymond M., Rousset F., 2004, GENEPOP (version3.4): population genetics software for exact tests and ecumenicism. Available at: http://wbiomed.curtin.edu.au/genepop/.html.
Liu, Y.L., Liu, L.X, Wu, Z.X., Lin, H., Li, B.F., Sun, X.Q., 2006, Isolation and characterization of polymorphic microsatellite loci in black sea bream (Acanthopagrus schlegeli) by cross-species amplification with six species of the Sparidae family, Aquat. Living Resour. 20, 257262.CrossRefGoogle Scholar
Liu, Z.J., Cordes, J.F., 2004, DNA marker technologies and their applications in aquaculture genetics. Aquaculture 238, 137.CrossRefGoogle Scholar
Macaranas, J.M., Mather, P.B., Hoeben, P., Capra, M.F., 1995, Allozyme and RAPD-DNA variation in the redclaw crayfish. Aust. J. Mar. Freshw. Res. 46, 12171228.CrossRefGoogle Scholar
McMurray, C.L., Hardy, K.J., Hawkey, P.M., 2010, Rapid, automated epidemiological typing of methicillin-resistant Staphylococcus aureus . J. Microbiol. Method. 80, 109111.CrossRefGoogle ScholarPubMed
Niu, D.H., Li, J.L., Liu, D.B., 2008, Polymorphic microsatellite loci for population studies of the razor clam, Sinonovacula constricta, Conserv. Genet. 9, 13931394.Google Scholar
Sambrook J., Russell D.W., 2001, Molecular Cloning. Third edition, New-York, Cold Spring Harbor Laboratory Press.
Selkoe, K.A., Toonen, R.J., 2006, Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers. Ecol. Lett. 9, 615629.CrossRefGoogle ScholarPubMed
Tautz, D., Trick, M., Dover, G., 1986, Cryptic simplicity in DNA is a major source of genetic variation. Nature 322, 652656.CrossRefGoogle ScholarPubMed
Yeh F.C., Yang R.C., Boyle T., 1999, PopGene (version1.32). Microsoft Window-base Software for Population Genetic Analysis: A Quick User’s Guide. University of Alberta, Center for International Forestry Research, Alberta, Canada.