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The effect of supplementing pony diets with yeast on 2. The faecal microbiome

Published online by Cambridge University Press:  25 June 2020

A. Garber*
Affiliation:
University of Glasgow, College of Medical, Veterinary and Life Sciences, School of Veterinary Medicine, McCall Building, Bearsden, Glasgow, G61 1QH, UK
P. M. Hastie
Affiliation:
University of Glasgow, College of Medical, Veterinary and Life Sciences, School of Veterinary Medicine, McCall Building, Bearsden, Glasgow, G61 1QH, UK
V. Farci
Affiliation:
University of Glasgow, College of Medical, Veterinary and Life Sciences, School of Veterinary Medicine, McCall Building, Bearsden, Glasgow, G61 1QH, UK
D. McGuinness
Affiliation:
University of Glasgow, Polyomics, Switchback Rd, Bearsden, Glasgow, G61 1BD, UK
L. Bulmer
Affiliation:
University of Glasgow, College of Medical, Veterinary and Life Sciences, School of Veterinary Medicine, McCall Building, Bearsden, Glasgow, G61 1QH, UK
O. Alzahal
Affiliation:
AB Vista, Woodstock Court, Blenheim Road, Marlborough Business Park, Marlborough, Wiltshire, SN8 4AN, UK
J. M. D. Murray
Affiliation:
University of Glasgow, College of Medical, Veterinary and Life Sciences, School of Veterinary Medicine, McCall Building, Bearsden, Glasgow, G61 1QH, UK
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Abstract

There is a need to develop feeding strategies to prevent the adverse effect of concentrate feeding in high-performance horses fed energy-dense diets aiming to maintain their health and welfare. The objective of this study is to determine the effect of a VistaEQ product containing 4% live yeast Saccharomyces cerevisiae (S. cerevisiae), with activity 5 × 108 colony-forming unit/g and fed 2 g/pony per day, on faecal microbial populations when supplemented with high-starch and high-fibre diets using Illumina next generation sequencing of the V3-V4 region of the 16S ribosomal RNA gene. The four treatments were allocated to eight mature Welsh section A pony geldings enrolled in a 4-period × 8 animal crossover design. Each 19-day experimental period consisted of an 18-day adaptation phase and a single collection day, followed by a 7-day wash out period. After DNA extraction from faeces and library preparation, α-diversity and linear discriminant analysis effect size were performed using 16S metagenomics pipeline in Quantitative Insights Into Microbial Ecology (QIIME™) and Galaxy/Hutlab. Differences between the groups were considered significant when linear discriminant analysis score was >2 corresponding to P < 0.05. The present study showed that S. cerevisiae used was able to induce positive changes in the equine microbiota when supplemented to a high-fibre diet: it increased relative abundance (RA) of Lachnospiraceae and Dehalobacteriaceae family members associated with a healthy core microbiome. Yeast supplementation also increased the RA of fibrolytic bacteria (Ruminococcus) when fed with a high-fibre diet and reduced the RA of lactate producing bacteria (Streptococcus) when a high-starch diet was fed. In addition, yeast increased the RA of acetic, succinic acid producing bacterial family (Succinivibrionaceae) and butyrate producing bacterial genus (Roseburia) when fed with high-starch and high-fibre diets, respectively. VistaEQ supplementation to equine diets can be potentially used to prevent acidosis and increase fibre digestibility. It may help to meet the energy requirements of performance horses while maintaining gut health.

Type
Research Article
Copyright
© The Author(s), 2020. Published by Cambridge University Press on behalf of The Animal Consortium

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References

Agazzi, A, Ferroni, M, Fanelli, A, Maroccolo, S, Invernizzi, G, Dell’Orto, V and Savoini, G 2011. Evaluation of the effects of live yeast supplementation on apparent digestibility of high-fiber diet in mature horses using the acid insoluble ash marker modified method. Journal of Equine Veterinary Science 31, 1318.CrossRefGoogle Scholar
Al Jassim, R, Scott, PT, Krause, DO, Denman, S and McSweeney, CS 2005. Cellulolytic and lactic acid bacteria in the gastrointestinal tract of the horse. Recent Advances in Animal Nutrition in Australia 15, 155163.Google Scholar
Al Jassim, RAM and Andrews, FM 2009. The bacterial community of the horse gastrointestinal tract and its relation to fermentative acidosis, laminitis, colic, and stomach ulcers. Veterinary Clinics of North America: Equine Practice 25, 199215.Google ScholarPubMed
Bedford, MR 2019. Future prospects for non-starch polysaccharide degrading enzymes development in monogastric nutrition. In The value of fibre (ed. González-Ortiz, G, Bedford, MR, Bach Knudsen, KE, Courtin, CM and Classen, HL), pp. 373383, Wageningen Academic Publishers, Wageningen, The Netherlands.CrossRefGoogle Scholar
Berg, JT, Chambers, B, Siegel, H and Biddle, A 2017. Equine microbiome project: understanding differences in the horse gut microbiome related to diet. Journal of Equine Veterinary Science 52, 94.CrossRefGoogle Scholar
Biddle, AS, Black, SJ and Blanchard, JL 2013. An in vitro model of the horse gut microbiome enables identification of lactate-utilizing bacteria that differentially respond to starch induction. PLoS ONE 8, e77599.CrossRefGoogle Scholar
Blackmore, TM, Dugdale, A, Argo, CM, Curtis, G, Pinloche, E, Harris, PA, Worgan, HJ, Girdwood, SE, Dougal, K, Newbold, CJ and McEwan, NR 2013. Strong stability and host specific bacterial community in faeces of ponies. PLoS ONE 8, e75079.CrossRefGoogle ScholarPubMed
Caporaso, JG, Bittinger, K, Bushman, FD, DeSantis, TZ, Andersen, GL and Knight, R 2010a. PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics 26, 266267.CrossRefGoogle ScholarPubMed
Caporaso, JG, Kuczynski, J, Stombaugh, J, Bittinger, K, Bushman, FD, Costello, EK, Fierer, N, Peña, AG, Goodrich, JK, Gordon, JI, Huttley, GA, Kelley, ST, Knights, D, Koenig, JE, Ley, RE, Lozupone, CA, McDonald, D, Muegge, BD, Pirrung, M, Reeder, J, Sevinsky, JR, Turnbaugh, PJ, Walters, WA, Widmann, J, Yatsunenko, T, Zaneveld, J and Knight, R 2010b. QIIME allows analysis of high-throughput community sequencing data. Nature Methods 7, 335336.CrossRefGoogle ScholarPubMed
Cichorska, B, Komosa, M, Nogowsk, L, Maćkowiak, P and Józefia, D 2014. Significance of nutrient digestibility in horse nutrition – a review. Annals of Animal Science 14, 779797.Google Scholar
Costa, MC and Weese, JS 2018. Understanding the Intestinal Microbiome in Health and Disease. Veterinary Clinics of North America: Equine Practice 34, 112.Google ScholarPubMed
Costa, MC, Stämpfli, HR, Arroyo, LG, Allen-Vercoe, E, Gomes, RG and Weese, JS 2015. Changes in the equine fecal microbiota associated with the use of systemic antimicrobial drugs. BMC Veterinary Research 11, 1119.CrossRefGoogle ScholarPubMed
Costa, MC, Arroyo, LG, Allen-Vercoe, E, Stampfli, HR, Kim, PT, Sturgeon, A and Weese, JS 2012. Comparison of the fecal microbiota of healthy horses and horses with colitis by high throughput sequencing of the V3-V5 region of the 16S rRNA gene. PLoS ONE 7, e41484.CrossRefGoogle ScholarPubMed
de Fombelle, A, Varloud, M, Goachet, AG, Jacotot, E, Philippeau, C, Drogoul, C and Julliand, V 2003. Characterization of the microbial and biochemical profile of the different segments of the digestive tract in horses given two distinct diets. Animal Science Journal 77, 293304.Google Scholar
Destrez, A, Grimm, P, Cézilly, F and Julliand, V 2015. Changes of the hindgut microbiota due to high-starch diet can be associated with behavioral stress response in horses. Physiology & Behavior 149, 159164.CrossRefGoogle ScholarPubMed
Dougal, K, de la Fuente G, Harris, PA, Girdwood, SE, Pinloche, E and Newbold, CJ 2013. Identification of a core bacterial community within the large intestine of the horse. PLoS ONE 8, e77660.CrossRefGoogle Scholar
Dougal, K, Harris, PA, Edwards, A, Pachebat, JA, Blackmore, TM, Worgan, HJ and Newbold, CJ 2012. A comparison of the microbiome and the metabolome of different regions of the equine hindgut. FEMS Microbiology Ecology 82, 642652.CrossRefGoogle ScholarPubMed
Dougal, K, de la Fuente, G, Harris, PA, Girdwood, SE, Pinloche, E, Geor, RJ, Nielsen, BD, Schott, HC, Elzinga, S and Newbold, CJ 2014. Characterisation of the faecal bacterial community in adult and elderly horses fed a high fibre, high oil or high starch diet using 454 pyrosequencing. PLoS ONE 9, e87424.CrossRefGoogle ScholarPubMed
Fernandes, KA, Kittelmann, S, Rogers, CW, Gee, EK, Bolwell, CF, Bermingham, EN and Thomas, DG 2014. Faecal microbiota of forage-fed horses in New Zealand and the population dynamics of microbial communities following dietary change. PLoS ONE 9, e112846.CrossRefGoogle ScholarPubMed
Garber, A, Hastie, PM, Bulmer, L, Mcguinness, D, Farci, V, Walker, N and Murray, JMD 2018. Yeast supplementation may have a positive effect on faecal microbiome in ponies fed high starch and high fibre diets. Advances in Animal Biosciences 9, 163.Google Scholar
Gonzalez-Garcia, AR, McCubbin, T, Navone, L, Stowers, C, Nielsen, KL and Marcellin, E 2017. Microbial propionic acid production. Fermentation 3, 21.CrossRefGoogle Scholar
Grimm, P, Philippeau, C and Julliand, V 2017. Faecal parameters as biomarkers of the equine hindgut microbial ecosystem under dietary change. Animal 11, 11361145.CrossRefGoogle ScholarPubMed
Harlow, BE, Donley, TM, Lawrence, LM and Flythe, MD 2015. Effect of starch source (corn, oats or wheat) and concentration on fermentation by equine faecal microbiota in vitro. Journal of Applied Microbiology 119, 12341244.CrossRefGoogle ScholarPubMed
Harlow, BE, Lawrence, LM, Hayes, SH, Crum, A and Flythe, MD 2016. Effect of dietary starch source and concentration on equine fecal microbiota. PLoS ONE 11, e0154037.CrossRefGoogle ScholarPubMed
Harris, P, Ellis, AD, Fradinho, MJ, Jansson, A, Julliand, V, Luthersson, N, Santos, AS and Vervuert, I 2016. Review: feeding conserved forage to horses: recent advances and recommendations. Animal 11, 958967.CrossRefGoogle ScholarPubMed
Hastie, PM, Mitchell, K and Murray, JA 2008. Semi-quantitative analysis of Ruminococcus flavefaciens, Fibrobacter succinogenes and Streptococcus bovis in the equine large intestine using real-time polymerase chain reaction. British Journal of Nutrition 100, 561568.Google ScholarPubMed
Hook, SE, Wright, A-DG and McBride, BW 2010. Methanogens: methane producers of the rumen and mitigation strategies. Archaea 2010, 945785.CrossRefGoogle ScholarPubMed
Jouany, JP, Medina, B, Bertin, G and Julliand, V 2009. Effect of live yeast culture supplementation on hindgut microbial communities and their polysaccharidase and glycoside hydrolase activities in horses fed a high-fiber or high-starch diet. Journal of Animal Science 87, 28442852.CrossRefGoogle ScholarPubMed
Julliand, V and Grimm, P 2016. Horse species symposium: the microbiome of the horse hindgut: history and current knowledge. Journal of Animal Science 94, 22622274.Google ScholarPubMed
Julliand, V, de Vaux, A, Millet, L and Fonty, G 1999. Identification of Ruminococcus flavefaciens as the predominant cellulolytic bacterial species of the equine cecum. Applied and Environmental Microbiology 65, 37383741.CrossRefGoogle ScholarPubMed
Martin, M 2011. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet.journal 17, 1012.Google Scholar
Masella, AP, Bartram, AK, Truszkowski, JM, Brown, DG and Neufeld, JD 2012. PANDAseq: paired-end assembler for illumina sequences. BMC Bioinformatics 13, 31.CrossRefGoogle ScholarPubMed
Milinovich, GJ, Klieve, AV, Pollitt, CC and Trott, DJ 2010. Microbial events in the hindgut during carbohydrate-induced equine laminitis. Veterinary Clinics of North America: Equine Practice 26, 7994.Google ScholarPubMed
Milinovich, GJ, Trott, DJ, Burrell, PC, van Eps, AW, Thoefner, MB, Blackall, LL, Al Jassim, RA, Morton, JM and Pollitt, CC 2006. Changes in equine hindgut bacterial populations during oligofructose-induced laminitis. Environmental Microbiology 8, 885898.Google ScholarPubMed
Murray, JAMD, Brown, S, O’Shaughnessy, P, Monteiro, A, Warren, H and Hastie, PM 2017. Effect of live yeast culture supplementation on fibrolytic and saccharolytic bacterial populations in the feces of horses fed a high-fiber or high-starch diet. Journal of Equine Veterinary Science 51, 4145.CrossRefGoogle Scholar
O’ Donnell, MM, Harris, HMB, Jeffery, IB, Claesson, MJ, Younge, B, O’ Toole, PW and Ross, RP 2013. The core faecal bacterial microbiome of Irish Thoroughbred racehorses. Letters of Applied Microbiology 57, 492501.CrossRefGoogle ScholarPubMed
Proudman, C, Darby, A and Escalona, E 2014. Faecal microbiome of the Thoroughbred racehorse and its response to dietary amylase supplementation. Equine Veterinary Journal 46, 35.Google Scholar
Proudman, CJ, Hunter, JO, Darby, AC, Escalona, EE, Batty, C and Turner, C 2015. Characterisation of the faecal metabolome and microbiome of Thoroughbred racehorses. Equine Veterinary Journal 47, 580586.CrossRefGoogle ScholarPubMed
Rodriguez, C, Taminiau, B, Brévers, B, Avesani, V, Van Broeck, J, Leroux, A, Gallot, M, Bruwier, A, Amory, H, Delmée, M and Daube, G 2015. Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission. BMC Microbiology 15, 181.CrossRefGoogle ScholarPubMed
Santos, EdO and Thompson, F 2014. The Family Succinivibrionaceae. In The prokaryotes: gammaproteobacteria (ed. Rosenberg, E, DeLong, EF, Lory, S, Stackebrandt, E and Thompson, F), pp. 639648, Springer Berlin Heidelberg, Berlin, Heidelberg.Google Scholar
Schoster, A, Mosing, M, Jalali, M, Staempfli, HR and Weese, JS 2016. Effects of transport, fasting and anaesthesia on the faecal microbiota of healthy adult horses. Equine Veterinary Journal 48, 595602.Google ScholarPubMed
Segata, N, Izard, J, Waldron, L, Gevers, D, Miropolsky, L, Garrett, WS and Huttenhower, C 2011. Metagenomic biomarker discovery and explanation. Genome Biology 12, R60.Google ScholarPubMed
Taran, FMP, Gobesso, AAO, Gonzaga, IVF, Françoso, R, Centini, TN, Moreira, CG and Silva, LFP 2016. Effects of different amounts of Saccharomyces cerevisiae supplementation on apparent digestibility and faecal parameters in horses fed high-roughage and high-concentrate diets. Livestock Science 186, 2933.CrossRefGoogle Scholar
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