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Four - Background of Select Paleozoological Samples

Published online by Cambridge University Press:  11 February 2019

J. Tyler Faith
University of Utah
R. Lee Lyman
University of Missouri, Columbia
Paleozoology and Paleoenvironments
Fundamentals, Assumptions, Techniques
, pp. 77 - 91
Publisher: Cambridge University Press
Print publication year: 2019

The following chapters of this book (Chapters 510) summarize and illustrate the diverse suite of analytical techniques used to develop paleoenvironmental reconstructions from paleozoological assemblages. Though our discussion of those techniques draws upon a variety of assemblages from different times and places around the world, we illustrate our analyses using the same faunal assemblages as often as possible. We hope this commonality will allow the reader to focus on variability in the analytical techniques rather than on variability in the faunal assemblages.

The faunas we routinely turn to include the late Quaternary micromammals (rodents and assorted insectivores <0.15 kg adult body mass) and macromammals (mammals >0.75 kg adult body mass) from Boomplaas Cave in South Africa. These faunas are zooarchaeological in the sense that they were recovered from deposits that include abundant archaeological material, though as we outline below this does not mean that humans accumulated all of the faunal remains. We also consider the late Quaternary small mammals (rodents and lagomorphs) from Homestead Cave in Utah (western United States). The Homestead Cave faunas are paleontological; human occupation of the site was limited, there are very few artifacts, and there is no evidence to implicate people in the accumulation of the faunal remains. We selected these sites for several reasons. First, both provide stratified sequences that span long periods of time and encompass substantial environmental changes (based on associated non-faunal data). Second, they provide sufficiently large samples to reasonably illustrate how various analytical techniques work. There is also substantial variability in sample sizes between assemblages, providing us with an opportunity to illustrate how to contend with sampling issues. And lastly, both sets of faunas come from sites associated with a large body of published literature concerning the stratigraphy, chronology, paleoenvironments, and archaeology.

Because we frequently turn to these sites in the remainder of this book, we provide a brief discussion of each below. We have included in this discussion a synopsis of their relevant paleoenvironmental histories, emphasizing previous inferences derived from the faunas. These brief summaries are not meant to represent the definitive paleoenvironmental histories of each site or the respective regions in which they are found. Rather we hope that highlighting a few key patterns that will emerge in our forthcoming paleoenvironmental analyses will make it easier for our readers to follow and critically engage with those analyses. For those readers interested in delving into the environmental history in more detail, we recommend Chase and Meadows (Reference Chase and Meadows2007) and Marean et al. (Reference Marean, Cawthra, Cowling, Allsopp, Colville and Verboom2014) for reviews of environmental archives relevant to Boomplaas Cave. Grayson’s (Reference Grayson2011) The Great Basin: A Natural Prehistory is the definitive source for paleoenvironmental records relevant to Homestead Cave.

Boomplaas Cave

Boomplaas Cave is a key late Quaternary archaeological and paleoenvironmental archive for southern Africa’s Cape Floristic Region. This region comprises an area of ~88,000 km2 along the southern and western-most portion of southern Africa, including the mountains of the Cape Fold Belt and the coastal lowlands. The Cape Floristic Region is best known for its spectacular floristic diversity, including the world’s highest frequency of endemic plant species (Goldblatt and Manning Reference Goldblatt and Manning2002; Linder Reference Linder2003), but to archaeologists it is also well known for its Middle and Later Stone Age archaeological sites that feature prominently in our understanding of modern human origins, with some of the best-known sites including the Klasies River Mouth caves, Blombos Cave, and the Pinnacle Point caves.

Boomplaas Cave is situated at an elevation of ~700 m above sea level within the cliffs of a limestone seam on the southern foothills of the Swartberg mountain range, approximately 60 m above the Cango Valley. The east–west trending Swartberg range forms the northern boundary of the intermontane basin known as the Klein Karoo, with the Outeniqua range marking its southern boundary 50 km to the south. The lowlands of the Klein Karoo, which sit in the rain-shadow of the Outeniquas, are a semi-desert; rainfall is higher in the mountainous uplands and Boomplaas Cave receives around 400 mm annual precipitation. Compared with much of the Klein Karoo, the Cango Valley is well-watered by streams draining from the flanks of the Swartberg and into the eastward-flowing Grobelaars River (at the foot of Boomplaas Cave) and the westward-flowing Matjes River (10 km west of Boomplaas Cave).

The vegetation in the immediate vicinity of Boomplaas Cave is part of a transitional shrubland whose component species vary in relation to temperature and rainfall gradients from the valley floor up the slopes of the Swartberg (see Vlok and Schutte-Vlok [Reference Vlok and Schutte-Vlok2010] for a detailed summary). The transitional shrublands are dominated by single shrub species, though grasses and short-lived herbs flourish after fires. In the low-lying areas just south of Boomplaas Cave occurs a shrubby habitat known as renosterveld, characterized by the renosterbos (Elytropappus rhinocerotis) and a sparse understory of grasses. Along watercourses and ravines in the Cango Valley are more densely wooded habitats that include sweet thorn trees (Acacia karroo) and ironwood (Olea spp.) among others (Moffett and Deacon Reference Moffett and Deacon1977). The transitional shrublands give way to fynbos habitats – hard-leaved evergreen shrublands typically dominated by restios, ericas, and proteas – as one moves up the slopes of the Swartberg. These include a grassy fynbos habitat known as waboomveld, indicated by the presence of Protea nitida (waboom or wagon tree) and relatively abundant grasses, just north of Boomplaas. The grasses that occur in the vicinity of Boomplaas include a mix of C3 (cool-season) and C4 (warm-season) species, reflecting the fact that rainfall is fairly evenly distributed through the year.

Excavations conducted by Hilary Deacon (University of Stellenbosch) from 1974 to 1979 uncovered a stratified sequence extending to 5 m in depth and spanning the past >65,000 years (H. J. Deacon 1979, Reference Deacon1995; H. J. Deacon and Brooker Reference Deacon and Brooker1976; H. J. Deacon et al. Reference Deacon, Deacon, Scholtz, Thackeray, Brink and Vogel1984; see also J. Deacon Reference Deacon1984). Deacon (Reference Deacon1979) organized the stratigraphy according to a hierarchical scheme of stratigraphic members, units, and sub-units. We use the coarser-scale members in our analyses primarily because these stratigraphic aggregates provide larger sample sizes. Our goal in these analyses is to illustrate the application of certain techniques, so finer-scale stratigraphic and temporal control – which might be important if our goal were to address particular paleoenvironmental questions – is not needed here.

The chronology of the Boomplaas Cave deposits is supported by radiocarbon dates (primarily on charcoal) for the middle to upper portions of the sequence and a combination of amino acid racemization (AAR) on ostrich eggshell (Miller et al. Reference Miller, Beaumont and Deacon1999) and U-series ages on speleothems (Vogel Reference Vogel, Tobias, Raath, Maggi-Cecchi and Doyle2001) for the lower section. The Boomplaas Cave chronology is summarized in Table 4.1. The lowest dated member (OCH) is associated with a broad range of age estimates but it includes Middle Stone Age artifacts attributed to the Howieson’s Poort industry, which has been dated elsewhere in southern Africa by optically stimulated luminescence to ~59 to 66 ka (Jacobs and Roberts Reference Jacobs and Roberts2017). The basal member (LOH) is estimated to date to 80 ka (H. J. Deacon Reference Deacon1979) but this is not supported by any radiometric age estimates.

Table 4.1 The stratigraphy and chronology of Boomplaas Cave. Radiocarbon dates reported here are those obtained on charcoal. Age ranges represent calibrated Bayesian models from Sealy et al. (Reference Sealy, Lee-Thorp, Loftus, Faith and Marean2016).

MemberAgeModeled age range (kcal BP)
DGL1,630 ± 50 (14C)1.6 to 1.4
1,700 ± 50 (14C)
1,510 ± 75 (14C)
BLD1,955 ± 65 (14C)2.3 to 1.6
BLA6,400 ± 75 (14C)8.0 to 6.4
BRL9,100 ± 135 (14C)12.3 to 10.1
10,425 ± 125 (14C)
CL12,060 ± 105 (14C)16.9 to 13.9
12,480 ± 130 (14C)
14,200 ± 240 (14C)
GWA17,830 ± 180 (14C)22.5 to 20.6
LPUndated23.1 to 22.2
LPC21,110 ± 420 (14C)25.8 to 25.1
21,220 ± 195 (14C)
YOL-32.3 to 25.8
BP32,400 ± 700 (14C)39.7 to 36.0
33,920 ± 770 (14C)
OLP37,400 ± 1370 (14C)42.9 to 40.3
44,000 ± 4,000 (AAR)
OCH>49,000 (14C)-
56,000 ± 6,000 or
65,000 ± 6,000 (AAR)
59,000 ± 2,000 (U-Series)
64,000 ± 2,000 (U-Series)
66,000 ± 7,000 (U-Series)

Boomplaas was excavated using 3 mm mesh screens, though select 1×1 m excavation squares were sieved through 2 mm mesh screens to enhance recovery of the microfauna (Avery Reference Avery1982). The recovered material has been reported in numerous publications spanning the past several decades. These include reports on the cultural remains (H. J. Deacon et al. Reference Deacon, Deacon and Brooker1976; H. J. Deacon et al. Reference Deacon, Deacon, Brooker and Wilson1978; J. Deacon Reference Deacon1984), the chronology (Miller et al. Reference Miller, Beaumont and Deacon1999; Vogel Reference Vogel, Tobias, Raath, Maggi-Cecchi and Doyle2001), fossil charcoal and pollen (H. J. Deacon et al. Reference Deacon, Scholtz, Daitz, Deacon, Hendey and Lambrechts1983; Scholtz Reference Scholtz1986), micromammals (Avery Reference Avery1982, Reference Avery2004; Thackeray Reference Thackeray1987), macromammals (Brink Reference Brink1999; Driesch and Deacon Reference Driesch and Deacon1985; Faith Reference Faith2013a; Klein Reference Klein1978, Reference Klein and Cruz-Uribe1983), and isotope geochemistry of ungulate tooth enamel (Sealy et al. Reference Sealy, Lee-Thorp, Loftus, Faith and Marean2016).

Table 4.2 reports Avery’s (Reference Avery1982) taxonomic abundances (minimum number of individuals = MNI) for the rodents and insectivores (shrews, elephant shrews, and golden moles) from Boomplaas Cave. The sample includes more than 30,000 individuals distributed across twenty-five species. Based primarily on an assessment of the ecology of the prey species, most of which are nocturnal, Avery (Reference Avery1982) suggests that barn owls (Tyto alba) were the likely accumulators of the assemblage, an argument consistent with the presence of modern barn owl roosts in rockshelters adjacent to Boomplaas Cave. The micromammals are especially dense in deposits lacking archaeological remains (H. J. Deacon Reference Deacon1979), suggesting they were deposited when the cave was unoccupied by people.

Table 4.2 Taxonomic abundances (MNI) for the Boomplaas Cave microfauna (after Avery Reference Avery1982).

ChrysochloridaeChlorotalpa duthieae2111114060615165844753103
MacroscelididaeElephantulus edwardii81264681101611511
SoricidaeMyosorex varius4469411001385054635687638644365712833
Suncus varilla27102219322527648903372
Crocidura cyanea24371044340000302771372
Crocidura flavescens91164671269329473104917051153
BathyergidaeCryptomys hottentotus1282247920027910689319155560100495
GliridaeGraphiurus ocularis1103444008371040
NesomyidaeDendromus melanotis13287182625484644741
Dendromus mesomelas000520100225110
Mystromys albicaudatus32893960295611910215103
Steatomys krebsii62710100000000000
Saccostomus campestris1020360000000000
MuridaeAcomys subspinosus4941695411161312021
Aethomys namaquensis7399552751243337349138760133
Dasymys incomtus2315422011015621
Mus minutoides386636711183131811
Myomyscus verreauxii9955315381114811821
Rhabdomys pumilio17396271981331181172071
Gerbilliscus afra053111000039001
Gerbillurus paeba02141000003101
Otomys laminatus56317143102432520
Otomys saundersiae53103501751897777613897709311358817035
Otomys irroratus233362191504411128203104429715833798422
Otomys unisulcatus926112879880617172914100

The Boomplaas macromammal data are derived from specimen counts (typically referred to as number of identified specimens, or NISP) provided by Faith (Reference Faith2013a), reported here in Table 4.3. Note that Faith (Reference Faith2013a) did not examine the faunas from the uppermost pastoralist occupation (member DGL), which is dominated by sheep. The sample includes more than 6,400 specimens distributed across thirty-six non-overlapping taxa, though many of our analyses focus specifically on the ungulates (>2,600 specimens distributed across twenty-one non-overlapping taxa). Given the highly fragmentary nature of the Boomplaas Cave material, which rendered most specimens unidentifiable to lower taxonomic groups, the vast majority of taxonomic identifications for ungulates are based on dental remains. Analysis of bone surface modifications of those specimens corresponding in size to the ungulate taxa (>5 kg) at Boomplaas Cave indicates a complex taphonomic history of bone accumulation (Faith Reference Faith2013a). The mammals from the bottom of the sequence were accumulated primarily by carnivores – leopards (Panthera pardus) being a likely candidate – with large raptors, probably the Cape eagle owl (Bubo capensis), also introducing remains belonging to the smallest bovids (Oreotragus oreotragus and Raphicerus spp.). From members BOL to GWA, there are variable amounts of bone accumulation related to people, carnivores, and raptors, with the anthropogenic component related mainly to the largest ungulate species. And in the upper members (CL and above), people accumulated most of the faunal remains. This complex taphonomic history poses some challenges for interpreting the environmental implications of the Boomplaas macromammals, and we discuss how this might be dealt with in subsequent chapters.

Table 4.3 Taxonomic abundances (NISP) for the Boomplaas Cave macromammals (after Faith Reference Faith2013a).

LagomorphaLepus capensis172469011212743
Bunolagus monticularis98219441101416266110
Leporidae indet.1321818031086120
RodentiaHystrix africaeaustralis83144000000400
PrimatesPapio ursinus215347819024136161610112
CarnivoraCanis cf. mesomelas1101000101000
Lycaon pictus0000000000040
Mellivora capensis2000000000000
Genetta sp.1000000000010
Herpestes ichneumon2000000000000
Herpestes pulverulentus0031000001000
Herpestes sp.2000000000000
Hyaenidae indet.0000000000200
Felis silvestris21100000000000
Panthera pardus21000001142142
Felidae indet.0010000000000
HyracoideaProcavia capensis1377126258293322013364410110018795
EquidaeEquus capensis00015121000000
Equus zebra/quagga1445341928241020124230
SuidaePotamochoerus larvatus0010000000000
BovidaeTaurotragus oryx10955502020070
Tragelaphus strepsiceros00110000000000
Tragelaphini indet.10815000020010
Hippotragus leucophaeus30411120000020
Hippotragus equinus0015000000000
Hippotragus sp.001115100120010
Redunca fulvorufula211240000275271
Redunca arundinum0110000000122
Redunca sp.352541000042282
Alcelaphus buselaphus12010010020000
Connochaetes cf. taurinus0000000060000
Connochaetes cf. gnou0000015061000
Damaliscus cf. dorcas00401100113082
Alcelaphini indet.00103100232000
Extinct caprin0075233844030210
Pelea capreolus17103117325121322248021
Antidorcas cf. marsupialis00041110011104
Oreotragus oreotragus651916217022771611322
Raphicerus melanotis2120000001111
Raphicerus campestris0010000000000
Raphicerus sp.63168314012161128498
Syncerus antiquus0004050000100
Syncerus caffer00211200001020
Syncerus sp.0002000000000

Paleoenvironmental Summary

Our task of providing a summary of the environmental history is complicated by the fact that some of the most basic details concerning the Cape Floristic Region’s paleoenvironments – were glacial phases of the Pleistocene wetter or drier than the present? – are actively debated (e.g., Chase and Meadows Reference Chase and Meadows2007; Chase et al. Reference Chase, Faith and Mackay2018; Faith Reference Faith2013b; Marean et al. Reference Marean, Cawthra, Cowling, Allsopp, Colville and Verboom2014). The debate is not due to a lack of data – the Cape Floristic Region has been a focus of paleoenvironmental research for decades (e.g., J. Deacon and Lancaster Reference Deacon and Lancaster1988) – but instead reflects a combination of seemingly contradictory lines of evidence coupled with a good measure of not yet well-understood regional variation. With this in mind, we focus below on what has been inferred from the Boomplaas mammals.

From the base of the sequence to the Last Glacial Maximum, the large mammals are interpreted as indicating a transition from shrubland habitats – perhaps not unlike the contemporary vegetation – to open grassland, with the grasslands replaced by shrubland at the onset of the Holocene (Faith Reference Faith2013a; Klein Reference Klein1978, Reference Klein and Cruz-Uribe1983). Isotopic analysis of the Last Glacial Maximum grazers indicates a dominance of C3 grasses in the diet, implying an intensification of winter rainfall systems in the region (Sealy et al. Reference Sealy, Lee-Thorp, Loftus, Faith and Marean2016). The vegetation history inferred from the microfauna complements this scenario, though Avery (Reference Avery1982) documents other subtle changes superimposed on this general trend. Avery (Reference Avery1982) and Thackeray (Reference Thackeray1987) provide independent analyses of the microfauna indicating a general decline in temperatures from the base of the sequence to the Last Glacial Maximum, with the Holocene characterized by the warmest temperatures in the sequence.

An important point of contention concerns the precipitation history. Previous interpretations of the Boomplaas faunas are in complete opposition, with the Last Glacial Maximum interpreted as either the driest portion of the sequence (Avery Reference Avery1982; H. J. Deacon et al. Reference Deacon, Deacon, Scholtz, Thackeray, Brink and Vogel1984; Thackeray Reference Thackeray1987) or the wettest (Faith Reference Faith2013a, Reference Faith2013b). These contradictions are worth keeping in mind, if only because they demonstrate that faunal-based paleoenvironmental reconstructions are neither infallible nor unambiguous – far from it! As is the case with all paleoenvironmental archives, confidence in interpretation is enhanced whenever multiple lines of evidence are in agreement. There are paleoenvironmental records not far from Boomplaas Cave (~70 km west) that indicate greater moisture availability during the Last Glacial Maximum compared with the Holocene (Chase et al. Reference Chase, Faith and Mackay2018), though the implications of environmental archives from elsewhere in the Cape Floristic Region are less clear.

Homestead Cave

Homestead Cave provides perhaps the most detailed late Quaternary mammal sequence for the Great Basin (Grayson Reference Grayson2006, Reference Grayson2011), the vast region of internal drainage in the arid western United States. Homestead Cave is located at the northwestern-most spur of the Lakeside Mountains just west of the Great Salt Lake in north-central Utah. This low-lying spur, known as Homestead Knoll, is a rocky promontory lacking active springs or perennial streams and receiving very little rainfall throughout the year (~225 mm). The cave is formed within a small limestone ridge and sits at an elevation of 1,406 m, approximately 100 m above the valley floor. To the immediate west and northwest is the saline playa of Pleistocene Lake Bonneville, the pluvial lake that formerly covered much of western Utah until the Pleistocene came to an end. Although the playa is barren, the vegetation on the knoll itself is dominated by grasses and shrubs – the dominants being shadscale (Atriplex confertifolia) and horsebrushes (Tetradymia spp.) – with a few scattered junipers (Juniperus osteosperma). Greasewood (Sarcobatus vermiculatus) and big sagebrush (Artemisia tridentata) are common on the valley floor, along with invasive cheat grasses (Bromus spp.).

Excavations at Homestead Cave were directed by David Madsen (Utah Geological Survey) in 1993 (Madsen Reference Madsen2000). His team excavated a 1 × 1 m square down to bedrock – at a depth of ~2.7 m – providing a finely stratified sequence that begins ~13,000 years ago and continues into historic times. The stratigraphy is aggregated according to eighteen analytical units, from Stratum I at the base to Stratum XVIII at the top (Table 4.4). The original chronology reported by Madsen (Reference Madsen2000) is provided by a series of twenty-one radiocarbon dates on various organic materials (e.g., fecal pellets, hackberry endocarps, charcoal), with an additional eighty radiocarbon dates obtained on kangaroo rat (Dipodomys spp.) femora more recently provided by Terry and Novak (Reference Terry and Novak2015). For the sake of simplicity, we report Madsen’s (Reference Madsen2000) chronology in Table 4.4.

Table 4.4 The stratigraphy and chronology of Homestead Cave (after Madsen Reference Madsen2000). Radiocarbon ages are calibrated (2σ range) using OxCal 4.3 (Bronk Ramsey Reference Bronk Ramsey2009) and the IntCal13 calibration curve (Reimer et al. Reference Reimer, Bard and Bayliss2013).

Stratum14C ageCal yrs BP
XVII1,020 ± 40799–1,051
XVI1,200 ± 50986–1,264
XIV2,850 ± 502,848–3,143
XIII3,480 ± 403,640–3,849
XII3,400 ± 603,483–3,830
X5,330 ± 655,946–6,278
VII6,160 ± 856,802–7,260
6,185 ± 1056,797–7,313
VI7,120 ± 707,791–8,154
V8,230 ± 699,022–9,406
IV8,195 ± 858,996–9,425
II8,520 ± 809,320–9,682
8,790 ± 809,561–10,154
8,830 ± 2409,241–10,564
I (upper 5 cm)10,160 ± 8511,396–12,127
10,350 ± 8011,836–12,527
I (general)10,910 ± 6012,696–12,942
I (lower 5 cm)11,065 ± 10512,729–13,096
11,181 ± 8512,811–13,213
11,263 ± 8312,975–13,303
11,270 ± 13513,796–14,892

Excavated deposits were passed through 1/4″ (6.4 mm), 1/8″ (3.2 mm), and 1/16″ (1.6 mm) mesh screens, from which organic and (rare) cultural remains were recovered. Madsen’s (Reference Madsen2000) monograph, which includes contributions from a variety of specialists, provides an excellent account of the excavated materials (see also Madsen et al. Reference Madsen, Rhode and Grayson2001). There are numerous other reports on Homestead Cave, including studies of the fecal pellets from woodrats (Neotoma spp.) (Smith and Betancourt Reference Smith and Betancourt2003) and artiodactyls (Broughton et al. Reference Broughton, Byers, Bryson, Eckerle and Madsen2008), fishes (Broughton Reference Broughton2000; Broughton et al. Reference Broughton, Madsen and Quade2000, Reference Broughton, Cannon, Arnold, Bogiatto and Dalton2006), mammals (Grayson Reference Grayson1998, Reference Grayson2000b; Grayson and Madsen Reference Broughton, Madsen and Quade2000; Lyman and O’Brien Reference Lyman and O’Brien2005; Rowe and Terry Reference Rowe and Terry2014; Terry Reference Terry2007, Reference Terry2010a; Terry and Rowe Reference Terry and Rowe2015; Terry et al. Reference Terry, Li and Hadly2011), and the chronology (Terry and Novak Reference Terry and Novak2015).

The very limited evidence for human occupation of Homestead Cave, in contrast to sites elsewhere in the Bonneville Basin, is probably related to the lack of available water. But this did not detract from the suitability of the cave for owls. Roosting screech owls (Megascops kennicottii) and dense piles of owl pellets were observed in the cave when excavations began (Madsen Reference Madsen2000), and owl pellets in various states of decay were found throughout the sequence, with many of the recovered fossils having remains of pellets adhering to them (Grayson Reference Grayson and Madsen2000a, Reference Grayson2000b). Like the micromammals from Boomplaas Cave, owls accumulated the vast majority of the Homestead faunal assemblage, which is dominated by rodents and lagomorphs. There are rare remains of large mammals, including artiodactyls and carnivores. These are represented primarily by small bones of the hands and feet (e.g., carpals, phalanges) and are thought to have been introduced by woodrats.

Our analyses of the Homestead Cave faunas make use of Grayson’s (Reference Grayson and Madsen2000a) specimen counts (NISP) for rodents and lagomorphs (Table 4.5). Grayson’s (Reference Grayson and Madsen2000a) data are based on identification of all mammals from the 1/4″ (6.4 mm) and 1/8″ (3.2 mm) sample fractions from fourteen of the eighteen stratigraphic units. Only the kangaroo rats (Dipodomys spp.) from Stratum X were identified so this stratum is not considered here. As is clear from Table 4.5, sample sizes are massive, with counts for individual assemblages ranging from 1,045 in Stratum XVIII – a solid figure by most paleozoological standards – to a whopping 28,525 in Stratum IV. These impressive samples are precisely why the Homestead Cave faunas feature so prominently in the biogeographic histories of Great Basin mammals.

Table 4.5 Taxonomic abundances (NISP) for the Homestead Cave small mammals (after Grayson Reference Grayson and Madsen2000a).

SciuridaeAmmospermophilus sp.00000003800000
Ammospermophilus cf. leucurus00052101146186760
Ammospermophilus leucurus265110191235637884111726411
Tamias sp.20000000000000
Tamias minimus20000000000000
Marmota cf. flaviventris304070120000000
Marmota flaviventris134080301100000
Urocitellus sp.01230010233200000
Urocitellus cf. mollis0018139180891833065211910
Urocitellus mollis5443817148765422720552323155635
GeomyidaeThomomys sp.10740423829525062492115366515735201144393100848
Thomomys bottae030182158351298644141427957874
Thomomys talpoides20000000000000
HeteromyidaeChaetodipus formosus221301000062140
Dipodomys sp.310121296412629271314016908652861437863431551840489692671
Dipodomys microps78375103324510947754511075467120127670448
Dipodomys ordii433417507637524103411221
Microdipodops sp.17000000000000
Microdipodops megacephalus610000000000000
Perognathus longimembris0487773721122231218362
Perognathus parvus121869121410000260
CricetidaeLemmiscus curtatus552121822030210390
Microtus sp.247197445331621441210
Neotoma sp.501505925843182147531805756265048
Neotoma cf. cinerea231012742501960334000070
Neotoma cinerea26723456461211100020
Neotoma cf. lepida372242774281786287313408072454125723226601810118
Neotoma lepida456688831445722871785222252879039411
Ondatra zibethicus00010300200010
Onychomys sp.74000011310050
Onychomys leucogaster841502114155100
Peromyscus sp.15501124205531521788852147491876120517
Pitimys sp.10000000000000
Reithrodontomys sp.43943659216013080
Reithrodontomys cf. megalotis00040000000000
Reithrodontomys megalotis54521894731551031233881
LeporidaeBrachylagus idahoensis19232341411010000
Lepus sp.22435779168020280642240761842064213835514
Lepus californicus02000000000000
Lepus townsendii182000000000000
Sylvilagus sp.202018324502332295144327818142422134910929415
Sylvilagus cf. audubonii2136132801526260
Sylvilagus cf. nuttallii28201135742331111

Paleoenvironmental Summary

The Great Basin has a spectacularly well-documented late Quaternary environmental history derived from geological evidence, plant macrofossil and pollen archives, and small mammal fossil assemblages (Grayson Reference Grayson2011). The Homestead Cave mammals have been used to inform on the nature of past climate change during the late Pleistocene and Holocene, as well as to understand the response of species to previously documented climatic changes during the middle Holocene (e.g., Grayson Reference Grayson1998, Reference Grayson and Madsen2000a, Reference Grayson2000b; Lyman and O’Brien Reference Lyman and O’Brien2005). Consistent with other paleoenvironmental indicators – including faunal assemblages from elsewhere in the Bonneville Basin (Schmitt and Lupo Reference Schmitt and Lupo2012; Schmitt et al. Reference Schmitt, Madsen and Lupo2002) – the Homestead mammals have been interpreted as indicating a late Pleistocene and early Holocene that was moister and cooler than what came afterwards. These conditions are suggested to have favored an expansion of sagebrush habitats with a prominent grass understory. A variety of sources indicate a middle Holocene that was warmer and drier than what came before or after, and this too has been inferred from the Homestead mammals. The mammals suggest that this phase of reduced moisture availability was associated with a decline of sagebrush and expansion of shadscale (Atriplex confertifolia), a shrub found in dry sediments that are highly saline. After the phase of middle Holocene aridity, environmental conditions broadly similar to the present prevailed.


Boomplaas Cave and Homestead Cave are, in some important ways, ideal collections with which to illustrate the variety of analytical techniques described in subsequent chapters of this volume. They are well studied and well known, they produced large samples for each of several chronologically tightly controlled stratigraphically delimited assemblages, the collections represent temporal spans known to include major episodes of climatic variability, and the taphonomic histories of the assemblages of each are sufficiently well known as to not introduce insurmountable biases or skewing of paleoenvironmental signals.

Not all collections of ancient faunal remains provide such exemplary samples as Boomplaas Cave and Homestead Cave, so do not be misled into thinking all collections are of equal value. As should be clear from Chapter 3 and this chapter, not only do analyzing and interpreting all collections require certain analytical assumptions, some collections may simply not be amenable to some kinds of analysis for any of a plethora of reasons. We thus call upon a variety of collections to illustrate particular analytical techniques or to underscore certain points in subsequent pages. It is our hope that, as we indicated earlier, in frequently referring to the same collections the reader need not focus too much on the particulars of those collections but instead can focus on the techniques under discussion. With the background of this and preceding chapters in hand, it is now time to turn to the focus of the volume, the analytical techniques that have been used to manipulate faunal data in such a way as to reveal their paleoenvironmental implications.

Figure 0

Table 4.1 The stratigraphy and chronology of Boomplaas Cave. Radiocarbon dates reported here are those obtained on charcoal. Age ranges represent calibrated Bayesian models from Sealy et al. (2016).

Figure 1

Table 4.2 Taxonomic abundances (MNI) for the Boomplaas Cave microfauna (after Avery 1982).

Figure 2

Table 4.3 Taxonomic abundances (NISP) for the Boomplaas Cave macromammals (after Faith 2013a).

Figure 3

Table 4.4 The stratigraphy and chronology of Homestead Cave (after Madsen 2000). Radiocarbon ages are calibrated (2σ range) using OxCal 4.3 (Bronk Ramsey 2009) and the IntCal13 calibration curve (Reimer et al. 2013).

Figure 4

Table 4.5 Taxonomic abundances (NISP) for the Homestead Cave small mammals (after Grayson 2000a).

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