Recently, Murray et al. (Chem Biol, 1998,
5:587–595) found that the hammerhead
ribozyme does not require divalent metal ions for activity
if incubated in high (≥1 M) concentrations of monovalent
ions. We further characterized the hammerhead cleavage reaction
in the absence of divalent metal. The hammerhead is active in
a wide range of monovalent ions, and the rate enhancement in 4 M
Li+ is only 20-fold less than that in 10 mM
Mg2+. Among the Group I monovalent metals, rate
correlates in a log-linear manner with ionic radius. The pH
dependence of the reaction is similar in 10 mM Mg2+,
4 M Li+, and 4 M Na+. The exchange-inert
metal complex Co(NH3)63+ also
supports substantial hammerhead activity. These results suggest
that a metal ion does not act as a base in the reaction, and that
the effects of different metal ions on hammerhead cleavage rates
primarily reflect structural contributions to catalysis.