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Computational acceleration of performance metric-based materials discovery via high-throughput screening and machine learning methods is becoming widespread. Nevertheless, development and optimization of the opto-electronic properties that depend on dilute concentrations of point defects in new materials have not significantly benefited from these advances. Here, the authors present an informatics and simulation suite to computationally accelerate these processes. This will enable faster and more fundamental materials research, and reduce the cost and time associated with the materials development cycle. Analogous to the new avenues enabled by current first-principles-based property databases, this type of framework will open entire new research frontiers as it proliferates.
Recent infection testing algorithms (RITA) for HIV combine serological assays with epidemiological data to determine likely recent infections, indicators of ongoing transmission. In 2016, we integrated RITA into national HIV surveillance in Ireland to better inform HIV prevention interventions. We determined the avidity index (AI) of new HIV diagnoses and linked the results with data captured in the national infectious disease reporting system. RITA classified a diagnosis as recent based on an AI < 1.5, unless epidemiological criteria (CD4 count <200 cells/mm3; viral load <400 copies/ml; the presence of AIDS-defining illness; prior antiretroviral therapy use) indicated a potential false-recent result. Of 508 diagnoses in 2016, we linked 448 (88.1%) to an avidity test result. RITA classified 12.5% of diagnoses as recent, with the highest proportion (26.3%) amongst people who inject drugs. On multivariable logistic regression recent infection was more likely with a concurrent sexually transmitted infection (aOR 2.59; 95% CI 1.04–6.45). Data were incomplete for at least one RITA criterion in 48% of cases. The study demonstrated the feasibility of integrating RITA into routine surveillance and showed some ongoing HIV transmission. To improve the interpretation of RITA, further efforts are required to improve completeness of the required epidemiological data.
Landraces (including heritage varieties) are an important agrobiodiversity resource offering considerable value as a buffer against crop failures, as a crop for niche markets, and as a source of diversity for crop genetic improvement activities underpinning future food security. Home gardens are reservoirs of landrace diversity, but some of the accessions held in them are vulnerable or threatened with extinction. Those associated with seed saving networks have added security, for example, ca. 800 varieties are stored in the Heritage Seed Library (HSL) of Garden Organic, UK. In this study, Amplified Fragment Length Polymorphisms-based genetic analysis of accessions held in the HSL was used to (a) demonstrate the range of diversity in the collection, (b) characterize accessions to aid collection management and (c) promote broader use of the collection. In total, 171 accessions were included from six crops: Vicia faba L., Pisum sativum L., Daucus carota L., Cucumis sativus L., Lactuca sativa L. and Brassica oleracea L. var. acephala (DC.) Metzq. Average expected heterozygosity ranged from 0.18 to 0.28 in D. carota; 0.02–0.18 in P. sativum; 0.05–0.18 in L. sativa; 0.15–0.26 in B. oleracea var. acephala; 0.15–0.37 in C. sativus and 0.07–0.36 in V. faba. Genetic diversity and Fst values generally reflected the breeding system and cultivation history of the different crops. Comparisons of the diversity found in heritage varieties with that found in commercial varieties did not show a consistent pattern. Principal coordinates analysis and Unweighted Pair Group Method with Arithmetic Mean cluster analysis were used to identify four potential duplicate accession pairs.
Introduction: Many barriers exist to integrating smoking cessation into delivery of lung cancer screening including limited provider time and patient misconceptions.
Aims: To demonstrate that proactive outreach from a telephone counsellor outside of the patient's usual care team is feasible and acceptable to patients.
Methods: Smokers undergoing lung cancer screening were approached for a telephone counselling study. Patients agreeing to participate in the intervention (n = 27) received two telephone counselling sessions. A 30-day follow-up evaluation was conducted, which also included screening participants receiving usual care (n = 56).
Results/Findings: Most (89%) intervention participants reported being satisfied with the proactive calls, and 81% reported the sessions were helpful. Use of behavioural cessation support programs in the intervention group was four times higher (44%) compared to the usual care group (11%); Relative Risk (RR) = 4.1; 95% CI: 1.7 to 9.9), and seven-day abstinence in the intervention group was double (19%) compared to the usual care group (7%); RR = 2.6; 95% CI: 0.8 to 8.9).
Conclusions: This practical telephone-based approach, which included risk messages clarifying continued risks of smoking in the context of screening results, suggests such messaging can boost utilisation of evidence-based tobacco treatment, self-efficacy, and potentially increase the likelihood of successful quitting.
Matter in neutron star cores reaches extremely high densities, forming states of matter that cannot be generated in the laboratory. The Equation of State (EOS) of the matter links to macroscopic observables, such as mass M and radius R, via the stellar structure equations. A promising technique for measuring M and R exploits hotspots (burst oscillations) that form on the stellar surface when material accreted from a companion star undergoes a thermonuclear explosion. As the star rotates, the hotspot gives rise to a pulsation, and relativistic effects encode information about M and R into the pulse profile. However the burst oscillation mechanism remains unknown, introducing uncertainty when inferring the EOS. I review the progress that we are making towards cracking this long-standing problem, and establishing burst oscillations as a robust tool for measuring M and R. This is a major goal for future large area X-ray telescopes.
We present a brief overview of MeerTRAP, a real-time, fully commensal survey for pulsars and fast transients with the MeerKAT radio telescope in South Africa. MeerTRAP will combine the excellent sensitivity of MeerKAT with an unprecedented amount of on-sky time in order to significantly extend the parameter space covered by similar, previous or ongoing, surveys with other radio telescopes. Here, we will give a brief overview of the project.
In this study the onset of stress-free Boussinesq thermal convection in rotating spherical shells with aspect ratio η = rinner/router = 0.9, Prandtl numbers Pr ∈ [10−4, 10−1], and Taylor numbers Ta ∈ [104, 1012] is considered. We focus on the form of the convective cell pattern that develops, and on its time scales, since this may have observational consequences for thermonuclear burning and the development of burst oscillations in the exploding oceans of accreting neutron stars (Watts (2012)).
Superburst oscillations are high frequency X-ray variations observed during hours’ long superbursts on accreting neutron stars. We investigate a potential mechanism to explain these observations; a buoyant r-mode, excited in the ocean layers of the star. These modes are affected by ash composition in the ocean so are a good probe of nuclear burning processes. The phenomenon could be used in pulse profile modelling as a way of measuring neutron star mass and radius, and so the dense matter equation of state.
Phased Array Feed (PAF) technology is the next major advancement in radio astronomy in terms of combining high sensitivity and large field of view. The Focal L-band Array for the Green Bank Telescope (FLAG) is one of the most sensitive PAFs developed so far. It consists of 19 dual-polarization elements mounted on a prime focus dewar resulting in seven beams on the sky. Its unprecedented system temperature of ~17 K will lead to a 3 fold increase in pulsar survey speeds as compared to contemporary single pixel feeds. Early science observations were conducted in a recently concluded commissioning phase of the FLAG where we clearly demonstrated its science capabilities. We observed a selection of normal and millisecond pulsars and detected giant pulses from PSR B1937+21.
PSR B1820–30A is located in the globular cluster NGC 6624 and has the smallest projected distance to the centre of any globular cluster in the sky plane. We observe this millisecond pulsar over more than 25 years and obtain higher-order rotational frequency time derivative measurements through high-precision timing. Modelling these higher-order derivatives as being due to orbital motion, we find that the pulsar is in either a low-eccentricity smaller orbit with a low mass companion or a high-eccentricity larger orbit with a massive companion. The cluster mass properties and the observed properties of other nearby sources indicate that the high-eccentricity solution is more probably. This reveals that the pulsar is orbiting around an intermediate-mass black hole (IMBH) of mass >7500 M⊙ located at the cluster centre. This contribution is based on previous work published in MNRAS 471, 1258 (2017).
New simultaneous X-ray and radio observations of the archetypal mode-switching pulsar PSR B0943+10 have been carried out with XMM-Newton and the LOFAR, LWA and Arecibo radio telescopes in November 2014. They allowed us to better constrain the X-ray spectral and variability properties of this pulsar and to detect, for the first time, the X-ray pulsations also during the X-ray-fainter mode. The combined timing and spectral analysis indicates that unpulsed non-thermal emission, likely of magnetospheric origin, and pulsed thermal emission from a small polar cap are present during both radio modes and vary in a correlated way.
The Square Kilometre Array will be an amazing instrument for pulsar astronomy. While the full SKA will be sensitive enough to detect all pulsars in the Galaxy visible from Earth, already with SKA1, pulsar searches will discover enough pulsars to increase the currently known population by a factor of four, no doubt including a range of amazing unknown sources. Real time processing is needed to deal with the 60 PB of pulsar search data collected per day, using a signal processing pipeline required to perform more than 10 POps. Here we present the suggested design of the pulsar search engine for the SKA and discuss challenges and solutions to the pulsar search venture.
An evolution of the low-frequency pulse profile of PSR B2217+47 is observed during a six-year observing campaign with the LOFAR telescope at 150 MHz. The evolution is manifested as a new component in the profile trailing the main peak. The leading part of the profile, including a newly-observed weak component, is steady during the campaign. The transient component is not visible in simultaneous observations at 1500 MHz using the Lovell telescope, implying a chromatic effect. A variation in the dispersion measure of the source is detected in the same timespan. Precession of the pulsar and changes in the magnetosphere are investigated to explain the profile evolution. However, the listed properties favour a model based on turbulence in the interstellar medium (ISM). This interpretation is confirmed by a strong correlation between the intensity of the transient component and main peak in single pulses. Since PSR B2217+47 is the fourth brightest pulsar visible to LOFAR, we speculate that ISM-induced pulse profile evolution might be relatively common but subtle and that SKA-Low will detect many similar examples. In this scenario, similar studies of pulse profile evolution could be used in parallel with scintillation arcs to characterize the properties of the ISM.
Pulsed non-thermal quiescent emission between 10 keV and around 150 keV has been observed in ~10 magnetars. For inner magnetospheric models of such hard X-ray signals, resonant Compton upscattering of soft thermal photons from the neutron star surface is the most efficient radiative process. We present angle-dependent hard X-ray upscattering model spectra for uncooled monoenergetic relativistic electrons. The spectral cut-off energies are critically dependent on the observer viewing angles and electron Lorentz factor. We find that electrons with energies less than around 15 MeV will emit most of their radiation below 250 keV, consistent with the observed turnovers in magnetar hard X-ray tails. Moreover, electrons of higher energy still emit most of the radiation below around 1 MeV, except for quasi-equatorial emission locales for select pulses phases. Our spectral computations use new state-of-the-art, spin-dependent formalism for the QED Compton scattering cross section in strong magnetic fields.
Rigid ryegrass is the most-troublesome, herbicide-resistant weed in cropping systems of southern Australia. Field experiments were undertaken at Roseworthy, South Australia, in 2013 and 2014, to identify effective herbicide options for the control of clethodim-resistant rigid ryegrass in Clearfield canola. PPI trifluralin + triallate followed by (fb) POST imazamox + imazapyr + clethodim + butroxydim had the lowest plant density of rigid ryegrass in 2014 and provided superior control compared with the standard grower practice of PPI trifluralin + triallate fb POST imazamox + imazapyr + clethodim in 1 of 2 yr. Propyzamide either alone or as a split application (PPI fb POST) or in combination with clethodim provided similar rigid ryegrass control to that of the standard grower practice (38 to 553 plants m−2). Rigid ryegrass treated with PPI dimethenamid-P, pethoxamid, pethoxamid + triallate, and PPI trifluralin fb carbetamide POST produced significantly more seeds than the standard grower practice, which would lead to reinfestation of subsequent crops. Canola yield responded positively to effective herbicide treatments, especially in 2014, when rigid ryegrass density was greater. PPI dimethenamid-P and pethoxamid alone or in combination with triallate and propyzamide were ineffective in reducing rigid ryegrass density and seed production to levels acceptable for continuous cropping systems.
A field study was undertaken to investigate the influence of different
management strategies on rigid ryegrass plant density and seedbank dynamics
over 4 yr. Even though weed seedbank declined by 86% after oaten hay in year
1, the residual seedbank enabled rigid ryegrass to reinfest field peas the
next year, and the population rebounded sharply when weed control relied
solely on PPI trifluralin. However, use of POST clethodim followed by
crop-topping for seed-set prevention of rigid ryegrass in field pea was
highly effective and caused a further decline in the weed seedbank.
Integration of effective management tactics over 3 yr significantly reduced
rigid ryegrass weed and spike density (90 and 81%) in the final year of the
4-yr cropping sequence. Use of oaten hay in year 1, followed by effective
weed control in field pea and wheat crops, depleted the high initial
seedbank (4,820 seeds m−2) to moderate levels (< 200 seeds
m−2) within 3 yr. Effective weed-management treatments
depleted the rigid ryegrass seedbank, reduced in-crop weed infestation, and
returned higher grain yields and profitability. The results of this study
clearly show that large rigid ryegrass populations can be managed
effectively without reducing crop productivity and profitability provided
multiyear weed-management programs are implemented effectively.
Following the ‘prompt’ radio outburst seen soon after the neutrino emission in SN 1987A (Turtle et al. 1987), we initiated a program to monitor the supernova at the Tidbinbilla Deep Space Communications Complex at 8.4 GHz in a search for radio emission from the expanding remnant. No radio emission has been detected to date (DOY 151, May 30 1988).
As part of the Z-PAndAS Keck II DEIMOS survey of resolved stars in our neighboring galaxy, Andromeda (M31), we have built up a unique data set of measured velocities and chemistries for thousands of stars in the Andromeda stellar halo, particularly probing its rich and complex substructure. In this contribution, we will discuss the structural, dynamical and chemical properties of Andromeda's dwarf spheroidal galaxies, and how there is no observational evidence for a difference in the evolutionary histories of those found on and off M31's vast plane of satellites. We will also discuss a possible extension to the most significant merger event in M31 - the Giant Southern Stream - and how we can use this feature to refine our understanding of M31's mass profile, and its complex evolution.
Two field experiments were conducted during 2012 and 2013 at Roseworthy, South Australia to identify effective herbicide options for the management of clethodim-resistant rigid ryegrass in faba bean. Dose–response experiments confirmed resistance in both field populations (B3, 2012 and E2, 2013) to clethodim and butroxydim. Sequencing of the target site of acetyl coenzyme A carboxylase gene in both populations identified an aspartate-2078-glycine mutation. Although resistance of B3 and E2 populations to clethodim was similar (16.5- and 21.4-fold more resistant than the susceptible control SLR4), the B3 population was much more resistant to butroxydim (7.13-fold) than E2 (2.24-fold). Addition of butroxydim to clethodim reduced rigid ryegrass plant density 60 to 80% and seed production 71 to 88% compared with the standard grower practice of simazine PPI plus clethodim POST. Clethodim + butroxydim combination had the highest grain yield of faba bean (980 to 2,400 kg ha−1). Although propyzamide and pyroxasulfone plus triallate PPI provided the next highest levels of rigid ryegrass control (< 60%), these treatments were more variable and unable to reduce seed production (6,354 to 13,570 seeds m−2) to levels acceptable for continuous cropping systems.