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Remarkably few attempts have been made to estimate contemporary effective population size (Ne) for parasitic species, despite the valuable perspectives it can offer on the tempo and pace of parasite evolution as well as coevolutionary dynamics of host–parasite interactions. In this study, we utilized multi-locus microsatellite data to derive single-sample and temporal estimates of contemporary Ne for a cestode parasite (Schistocephalus solidus) as well as three-spined stickleback hosts (Gasterosteus aculeatus) in lakes across Alaska. Consistent with prior studies, both approaches recovered small and highly variable estimates of parasite and host Ne. We also found that estimates of host Ne and parasite Ne were sensitive to assumptions about population genetic structure and connectivity. And, while prior work on the stickleback–cestode system indicates that physiographic factors external to stickleback hosts largely govern genetic variation in S. solidus, our findings indicate that stickleback host attributes and factors internal to the host – namely body length, genetic diversity and infection – shape contemporary Ne of cestode parasites.
Objectives: Suicidal ideation (SI) is highly prevalent in Iraq/Afghanistan-era veterans with a history of mild traumatic brain injury (mTBI), and multiple mTBIs impart even greater risk for poorer neuropsychological functioning and suicidality. However, little is known about the cognitive mechanisms that may confer increased risk of suicidality in this population. Thus, we examined relationships between neuropsychological functioning and suicidality and specifically whether lifetime mTBI burden would moderate relationships between cognitive functioning and suicidal ideation. Methods: Iraq/Afghanistan-era Veterans with a history of mTBI seeking outpatient services (N = 282) completed a clinical neuropsychological assessment and psychiatric and postconcussive symptom questionnaires. Results: Individuals who endorsed SI reported more severe post-traumatic stress disorder (PTSD), depression, and postconcussive symptoms and exhibited significantly worse memory performance compared to those who denied SI. Furthermore, mTBI burden interacted with both attention/processing speed and memory, such that poorer performance in these domains was associated with greater likelihood of SI in individuals with a history of three or more mTBIs. The pattern of results remained consistent when controlling for PTSD, depression, and postconcussive symptoms. Conclusions: Slowed processing speed and/or memory difficulties may make it challenging to access and use past experiences to solve current problems and imagine future outcomes, leading to increases in hopelessness and SI in veterans with three or more mTBIs. Results have the potential to better inform treatment decisions for veterans with history of multiple mTBIs. (JINS, 2019, 25, 79–89)
Most agree that models of binary time-series-cross-sectional data in political science often possess unobserved unit-level heterogeneity. Despite this, there is no clear consensus on how best to account for these potential unit effects, with many of the issues confronted seemingly misunderstood. For example, one oft-discussed concern with rare events data is the elimination of no-event units from the sample when estimating fixed effects models. Many argue that this is a reason to eschew fixed effects in favor of pooled or random effects models. We revisit this issue and clarify that the main concern with fixed effects models of rare events data is not inaccurate or inefficient coefficient estimation, but instead biased marginal effects. In short, only evaluating event-experiencing units gives an inaccurate estimate of the baseline risk, yielding inaccurate (often inflated) estimates of predictor effects. As a solution, we propose a penalized maximum likelihood fixed effects (PML-FE) estimator, which retains the complete sample by providing finite estimates of the fixed effects for each unit. We explore the small sample performance of PML-FE versus common alternatives via Monte Carlo simulations, evaluating the accuracy of both parameter and effects estimates. Finally, we illustrate our method with a model of civil war onset.
The newborn lamb lacks circulating antibodies and relies on an early and adequate intake of colostrum for passive protection against disease and for energy (Black, Francis and Nicholls, 1985; Mellor, 1990). However, lambs may receive less colostrum than they require because of sibling competition, maternal undernutrition or udder disease. Colostrum insufficiency accounts for about 25% of perinatal lamb deaths world wide (Khalaf, Doxey and Baxter, 1979).
Powdered colostrum substitutes may be used to supplement ‘at risk’ lambs but, because the products are manufactured outside the United Kingdom (UK), mainly from bovine sources, their relevance to UK sheep enterprises is uncertain. Further, their available energy content is low because the main constituent, protein, is not catabolized by newborn lambs (Mellor and Cockburn, 1986). The present work measured the ability of one substitute derived from bovine whey (based on ProLAM, Fisons Animal Health Ltd), with or without supplementary glucose; to prevent disease and promote growth to 3 months in lambs reared in typical UK farm conditions.
While our fascination with understanding the past is sufficient to warrant an increased focus on synthesis, solutions to important problems facing modern society require understandings based on data that only archaeology can provide. Yet, even as we use public monies to collect ever-greater amounts of data, modes of research that can stimulate emergent understandings of human behavior have lagged behind. Consequently, a substantial amount of archaeological inference remains at the level of the individual project. We can more effectively leverage these data and advance our understandings of the past in ways that contribute to solutions to contemporary problems if we adapt the model pioneered by the National Center for Ecological Analysis and Synthesis to foster synthetic collaborative research in archaeology. We propose the creation of the Coalition for Archaeological Synthesis coordinated through a U.S.-based National Center for Archaeological Synthesis. The coalition will be composed of established public and private organizations that provide essential scholarly, cultural heritage, computational, educational, and public engagement infrastructure. The center would seek and administer funding to support collaborative analysis and synthesis projects executed through coalition partners. This innovative structure will enable the discipline to address key challenges facing society through evidentially based, collaborative synthetic research.
Mitochondrial dysfunction and resulting changes in adiposity have been observed in the offspring of animals fed a high fat (HF) diet. As iron is an important component of the mitochondria, we have studied the offspring of female rats fed complete (Con) or iron-deficient (FeD) rations for the duration of gestation to test for similar effects. The FeD offspring were ~12% smaller at weaning and remained so because of a persistent reduction in lean tissue mass. The offspring were fed a complete (stock) diet until 52 weeks of age after which some animals from each litter were fed a HF diet for a further 12 weeks. The HF diet increased body fat when compared with animals fed the stock diet, however, prenatal iron deficiency did not change the ratio of fat:lean in either the stock or HF diet groups. The HF diet caused triglyceride to accumulate in the liver, however, there was no effect of prenatal iron deficiency. The activity of the mitochondrial electron transport complexes was similar in all groups including those challenged with a HF diet. HF feeding increased the number of copies of mitochondrial DNA and the prevalence of the D-loop mutation, however, neither parameter was affected by prenatal iron deficiency. This study shows that the effects of prenatal iron deficiency differ from other models in that there is no persistent effect on hepatic mitochondria in aged animals exposed to an increased metabolic load.
There is a lack of evidence pointing to the efficacy of any specific psychotherapy for adults with anorexia nervosa (AN). The aim of this study was to compare three psychological treatments for AN: Specialist Supportive Clinical Management, Maudsley Model Anorexia Nervosa Treatment for Adults and Enhanced Cognitive Behavioural Therapy.
A multi-centre randomised controlled trial was conducted with outcomes assessed at pre-, mid- and post-treatment, and 6- and 12-month follow-up by researchers blind to treatment allocation. All analyses were intention-to-treat. One hundred and twenty individuals meeting diagnostic criteria for AN were recruited from outpatient treatment settings in three Australian cities and offered 25–40 sessions over a 10-month period. Primary outcomes were body mass index (BMI) and eating disorder psychopathology. Secondary outcomes included depression, anxiety, stress and psychosocial impairment.
Treatment was completed by 60% of participants and 52.5% of the total sample completed 12-month follow-up. Completion rates did not differ between treatments. There were no significant differences between treatments on continuous outcomes; all resulted in clinically significant improvements in BMI, eating disorder psychopathology, general psychopathology and psychosocial impairment that were maintained over follow-up. There were no significant differences between treatments with regard to the achievement of a healthy weight (mean = 50%) or remission (mean = 28.3%) at 12-month follow-up.
The findings add to the evidence base for these three psychological treatments for adults with AN, but the results underscore the need for continued efforts to improve outpatient treatments for this disorder.
Spatial interdependence—the dependence of outcomes in some units on those in others—is substantively and theoretically ubiquitous and central across the social sciences. Spatial association is also omnipresent empirically. However, spatial association may arise from three importantly distinct processes: common exposure of actors to exogenous external and internal stimuli, interdependence of outcomes/behaviors across actors (contagion), and/or the putative outcomes may affect the dimensions along which the clustering occurs (selection). Accurate inference about any of these processes generally requires an empirical strategy that addresses all three well. From a spatial-econometric perspective, this suggests spatiotemporal empirical models with exogenous covariates (common exposure) and spatial lags (contagion), with the spatial weights being endogenous (selection). From a longitudinal network-analytic perspective, the same three processes are identified as potential sources of network effects and network formation. From that perspective, actors' self-selection into networks (by, e.g., behavioral homophily) and actors' behavior that is contagious through those network connections likewise demands theoretical and empirical models in which networks and behavior coevolve over time. This paper begins building such models by, on theoretical side, extending a Markov type-interaction model to allow endogenous tie-formation, and, on empirical side, merging a simple spatial-lag logit model of contagious behavior with a simple p*-logit model of network formation. One interesting consequence of network-behavior coevolution—identically, endogenous patterns of spatial interdependence—emphasized here is how it can produce history-dependent political dynamics, including equilibrium phat and path dependence (Page 2006). The paper concludes with an illustrative application to alliance formation and conflict behavior among the great powers in the first half of the twentieth century.
In this paper, we demonstrate the econometric consequences of different specification and estimation choices in the analysis of spatially interdependent data and show how to calculate and present spatial effect estimates substantively. We consider four common estimators—nonspatial OLS, spatial OLS, spatial 2SLS, and spatial ML. We examine analytically the respective omitted-variable and simultaneity biases of nonspatial OLS and spatial OLS in the simplest case and then evaluate the performance of all four estimators in bias, efficiency, and SE accuracy terms under more realistic conditions using Monte Carlo experiments. We provide empirical illustration, showing how to calculate and present spatial effect estimates effectively, using data on European governments' active labor market expenditures. Our main conclusions are that spatial OLS, despite its simultaneity, performs acceptably under low-to-moderate interdependence strength and reasonable sample dimensions. Spatial 2SLS or spatial ML may be advised for other conditions, but, unless interdependence is truly absent or minuscule, any of the spatial estimators unambiguously, and often dramatically, dominates on all three criteria the nonspatial OLS commonly used currently in empirical work in political science.
Duration data are often subject to various forms of censoring that require adaptations of the likelihood function to properly capture the data generating process, but existing spatial duration models do not yet account for these potential issues. Here, we develop a method to estimate spatial-lag duration models when the outcome suffers from right censoring, the most common form of censoring. We adapt Wei and Tanner's (1991) imputation algorithm for censored (non-spatial) regression data to models of spatially interdependent durations. The algorithm treats the unobserved duration outcomes as censored data and iterates between multiple imputation of the incomplete, that is, right censored, values and estimation of the spatial duration model using these imputed values. We explore the performance of an estimator for log-normal durations in the face of varying degrees of right censoring via Monte Carlo and provide empirical examples of its estimation by analyzing spatial dependence in states' entry dates into World War I.
We describe the performance of the Boolardy Engineering Test Array, the prototype for the Australian Square Kilometre Array Pathfinder telescope. Boolardy Engineering Test Array is the first aperture synthesis radio telescope to use phased array feed technology, giving it the ability to electronically form up to nine dual-polarisation beams. We report the methods developed for forming and measuring the beams, and the adaptations that have been made to the traditional calibration and imaging procedures in order to allow BETA to function as a multi-beam aperture synthesis telescope. We describe the commissioning of the instrument and present details of Boolardy Engineering Test Array’s performance: sensitivity, beam characteristics, polarimetric properties, and image quality. We summarise the astronomical science that it has produced and draw lessons from operating Boolardy Engineering Test Array that will be relevant to the commissioning and operation of the final Australian Square Kilometre Array Path telescope.
Spatial/spatiotemporal interdependence—that is, that outcomes, actions or choices of some unit-times depend on those of other unit-times—is substantively important and empirically ubiquitous in binary outcomes of interest across the social sciences. Estimating and interpreting binary-outcome models that incorporate such spatial/spatiotemporal dynamics directly is difficult and rarely attempted, however. This article explains the inferential challenges posed by spatiotemporal interdependence in binary-outcome models and recent advances in their estimation. Monte Carlo simulations compare the performance of one of these consistent and asymptotically efficient methods (maximum simulated likelihood, using recursive importance sampling) to estimation strategies naïve about (inter-) dependence. Finally, it shows how to calculate, in terms of probabilities of outcomes, the estimated spatial/spatiotemporal effects of (and response paths to) hypotheticals of substantive interest. It illustrates with an application to civil war in Sub-Saharan Africa.
This paper describes the system architecture of a newly constructed radio telescope – the Boolardy engineering test array, which is a prototype of the Australian square kilometre array pathfinder telescope. Phased array feed technology is used to form multiple simultaneous beams per antenna, providing astronomers with unprecedented survey speed. The test array described here is a six-antenna interferometer, fitted with prototype signal processing hardware capable of forming at least nine dual-polarisation beams simultaneously, allowing several square degrees to be imaged in a single pointed observation. The main purpose of the test array is to develop beamforming and wide-field calibration methods for use with the full telescope, but it will also be capable of limited early science demonstrations.
Carefully timed tandem microbubbles have been shown to produce directional and targeted membrane poration of individual cells in microfluidic systems, which could be of use in ultrasound-mediated drug and gene delivery. This study aims at contributing to the understanding of the mechanisms at play in such an interaction. The dynamics of single and tandem microbubbles between two parallel plates is studied numerically and analytically. Comparisons are then made between the numerical results and the available experimental results. Numerically, assuming a potential flow, a three-dimensional boundary element method (BEM) is used to describe complex bubble deformations, jet formation, and bubble splitting. Analytically, compressibility and viscous boundary layer effects along the channel walls, neglected in the BEM model, are considered while shape of the bubble is not considered. Comparisons show that energy losses modify the bubble dynamics when the two approaches use identical initial conditions. The initial conditions in the boundary element method can be adjusted to recover the bubble period and maximum bubble volume when in an infinite medium. Using the same conditions enables the method to recover the full dynamics of single and tandem bubbles, including large deformations and fast re-entering jet formation. This method can be used as a design tool for future tandem-bubble sonoporation experiments.
It has become increasingly apparent that LCP provides an ideal form, fit, and function for many broadband passive components. Since LCP is available in thicknesses less than 1 mil with low dielectric constant, this enables easy design of varying controlled impedances. Further, LCP’s property of being its own adhesive layer provides for a high layer count in a multilayer stack while simultaneously maintaining high-frequency performance that otherwise would be detuned by poor electrical ply layers. This chapter provides design and development examples of broadband passives that benefit from LCP. In section 6.1 we describe a broadband Marchand balun implemented on multilayer LCP covering 4–20 GHz and in section 6.2 a broadband Wilkinson power divider–combiner operating over 2–18 GHz. Section 6.3 presents a novel hybrid coupler using multilayer LCP to achieve a broadband design within a compact area.
Broadband LCP Marchand balun
A balun converts differential “balanced” signals into single-ended “unbalanced” signals, and vice versa. Marchand baluns are found in numerous microwave circuit designs owing to their characteristically wide bandwidth, low imbalance, and symmetric balanced ports. To achieve a wide bandwidth ratio, a Marchand balun is realized with multilayered broadside coupled microstrip lines implemented on LCP. A novel twin-thickness thin-film  structure has been devised specifically to reduce balun conduction loss without sacrificing operation bandwidth.