Aquatic ecosystems - lakes, ponds and streams - are hotspots of biodiversity in the cold and arid environment of Continental Antarctica. Environmental change is expected to increasingly alter Antarctic aquatic ecosystems and modify the physical characteristics and interactions within the habitats that they support. Here, we describe physical and biological features of the peripheral ‘moat’ of a closed-basin Antarctic lake. These moats mediate connectivity amongst streams, lake and soils. We highlight the cyclical moat transition from a frozen winter state to an active open-water summer system, through refreeze as winter returns. Summer melting begins at the lakebed, initially creating an ice-constrained lens of liquid water in November, which swiftly progresses upwards, creating open water in December. Conversely, freezing progresses slowly from the water surface downwards, with water at 1 m bottom depth remaining liquid until May. Moats support productive, diverse benthic communities that are taxonomically distinct from those under the adjacent permanent lake ice. We show how ion ratios suggest that summer exchange occurs amongst moats, streams, soils and sub-ice lake water, perhaps facilitated by within-moat density-driven convection. Moats occupy a small but dynamic area of lake habitat, are disproportionately affected by recent lake-level rises and may thus be particularly vulnerable to hydrological change.

Protection of Antarctica's biodiversity and ecosystem values is enshrined in the Protocol on Environmental Protection to the Antarctic Treaty, which provides for the designation of Antarctic Specially Protected Areas (ASPAs) to areas with outstanding values. Concern has been raised that existing ASPAs fail to prioritize areas to maximize the likelihood of ensuring the long-term conservation of Antarctic ecosystems and biodiversity. The absence of systematic and representative protection is particularly acute for inland aquatic ecosystems, which support a disproportionate amount of inland biodiversity. This paper promotes the case for overt inclusion of inland waters as a critical component of a representative protected area framework for Antarctica, thereby addressing their current underrepresentation. We set out a structured approach to enable the selection of representative freshwater systems for inclusion in the ASPA framework that, with modification, could also be applied across other Antarctic habitats. We acknowledge an overall lack of information on the biogeography of inland aquatic diversity and recommend increased use of remote data collection along with classification tools to mitigate this, as well as the need for the consideration of catchment-scale processes. Changes that accompany contemporary and anticipated climate change make the need for the conservation of representative biodiversity increasingly urgent.

Lake Untersee is a perennially ice-covered Antarctic lake that consists of two basins. The deepest basin, next to the Anuchin Glacier is aerobic to its maximum depth of 160 m. The shallower basin has a maximum depth of 100 m, is anoxic below 80 m, and is shielded from convective currents. The thermal profile in the anoxic basin is unusual in that the water temperature below 50 m is constant at 4°C but rises to 5°C between 70 m and 80 m depth, then drops to 3.7°C at the bottom. Field measurements were used to conduct a thermal and stability analysis of the anoxic basin. The shape of the thermal maximum implies two discrete locations of energy input, one of 0.11 W m-2 at 71 m depth and one of 0.06 W m-2 at 80 m depth. Heat from microbial activity cannot account for the required amount of energy at either depth. Instead, absorption of solar radiation due to an increase in water opacity at these depths can account for the required energy input. Hence, while microbial metabolism is not an important source of heat, biomass increases opacity in the water column resulting in greater absorption of sunlight.

Over a century ago microfaunal diversity was first recorded by James Murray in lakes at Cape Royds, Ross Island, Antarctica. The report stands as the seminal study for today’s biodiversity investigations, and as a baseline to evaluate changes in faunal communities and introductions. In the present study, Cape Royds lakes were revisited and the mitochondrial c oxidase subunit I (COI) gene and morphology were used to compare diversity of Rotifera, Tardigrada and Nematoda with the records Murray published in the early 1900s. Cyanobacterial mats and the water column were sampled for microfauna from the five largest lakes using methods described by Murray. Across all five lakes similar patterns were observed for species distribution of all three phyla reported by Murray over 100 years ago. Some changes in species assemblages were identified within and between lakes, but there were no new introductions of named species for the Cape Royds region. Some of the species included by Murray in his monograph have been recently redescribed as Antarctic endemics, but others still retain their original name from the Northern Hemisphere holotypes and are also in need of revision to adequately determine the true endemism for these faunal groups.

Contrary to earlier beliefs, crustaceans are present in ice-covered lakes of Antarctica. Interpretation of the significance of this has been hampered by the absence of robust identification of taxa present. We examine cyclopoid copepods from three widely separated lakes. All belong to the michaelseni group of the genus Diacyclops, which is widespread across Continental Antarctica, but do not fit into any existing species. Two new species were identified from eastern Antarctica, D. walkeri from Pineapple Lake (Vestfold Hills) and D. kaupi from Transkriptsii Gulf (Bunger Hills). Most significant was a dense population of a new epibenthic species (D. joycei) associated with microbial mats in Lake Joyce, one of the smaller McMurdo Dry Valleys lakes. This represents the first record of adult cyclopoid copepods from the ice-covered lakes of the Transantarctic Mountains. Continental Antarctica is the centre of diversity for this group of crustaceans and we argue that this is better explained by persistence through past glacial advances rather than by recent post-glacial colonization. The existence of a species endemic to Lake Joyce but apparently absent from other Dry Valleys lakes is discussed in relation to our understanding of the history of the McMurdo Dry Valleys lakes and their faunas.

Meltwater ponds are important biodiversity elements in continental Antarctica. Many occupy closed basins and are vulnerable to changes in the balance between water accrual, through melting of ice and snow, and water loss by ablation and evaporation. We use a two-decade long record of ponds on the McMurdo Ice Shelf to assess temporal variability in key limnological variables. Ponds underwent many-fold change in biologically conservative variables, such as conductivity, and changes were similar in ponds from different catchments but of comparable area. In contrast, biologically active variables (pH, inorganic nutrients and planktonic/benthic biomass) are buffered by in-pond processes and show consistency between years and no coherence across catchments. Coherent behaviour across catchments implies an overarching, climatic effect. However, we could identify no signature of summer air temperature or irradiance in pond dynamics, although winter snow deposition may leave a legacy of low conductivity to the following summer. While ponds are clearly affected by climate, our data show that ecosystem responses are complex and highlight the need for system-appropriate, long-term observation if directional environmental change is to be separated from inherent variability in systems that respond to multiple climatic variables and which have significant biological buffering capacity.

The planktonic microbial communities of three meltwater ponds, located on the McMurdo Ice Shelf, were investigated from the end of January 2008 to early April, during which almost the entire pond volumes froze. The ponds were comprised of an upper mixed layer overlying a salt-stabilized density gradient in which planktonic communities were primarily embedded. Plankton comprised all components of the “microbial loop”, though carnivorous protists were rare. As the ponds froze and light became increasingly limited, it was expected conditions would induce physiological changes altering the functional role of autotrophic and heterotrophic microplankton within the ponds. The results showed that microbial groups responded to the onset of winter by declining in abundance, though an exception was the appearance of filamentous cyanobacteria in the water column in March. As freezing progressed, autotrophs declined more rapidly than heterotrophs and grazing rates and abundances of mixotrophic and heterotrophic organisms increased. Grazing pressure on bacteria and picophytoplankton also increased, in part explaining their decline over time. The results indicate that stressors imposed during freezing select for increasing heterotrophy within the remaining microbial communities, although all components of the food web eventually decline as the final freeze approaches.

Observations were made of water column chemistry in four Na-Cl dominated ponds on the McMurdo Ice Shelf from the end of January to early April in 2008. During that time the ponds went from ice-free to predominantly frozen, with only a small volume of residual hypoxic, saline liquid trapped at the base of each pond. Changes in the concentrations of inorganic solutes with time distinguished Na, Cl, Mg, K, SO4, As, U and Mn as ions and trace elements that behave mainly conservatively during freezing, from those which are affected by biological processes (removing HCO3) and the precipitation of mineral phases such as calcite (removing Ca and more HCO3). Dissolved Fe, Mo, Cu and Zn also show evidence of precipitation from the water column during freezing; geochemical speciation modelling predicts the formation of stable insoluble mineral phases such as Fe oxides and oxyhydroxides while conditions are oxic, and Fe-, Cu-, Mo- and Zn-sulphide minerals in the presence of H2S. Consequently, under winter conditions, residual liquid beneath the ice in such ponds is anticipated to be an anoxic Na-Cl brine with the capacity to develop high concentrations of toxic trace elements such as As and U.

Meltwater ponds are one of the most widespread aquatic habitats in ice-free areas of continental Antarctica. While most studies of such systems occur during the Antarctic summer, here we report on ice formation and water column attributes in four meltwater ponds on the McMurdo Ice Shelf during autumn, when they went from ice-free to > 80 cm thickness of ice. Ice thickness grew at an average rate of 1.5 cm d-1 in all ponds and as ice formed, salts and gases were excluded. This resulted in conductivity rising from 3–5 to > 60 mS cm-1 and contributed to the ebullition of gases. Incorporation of gas bubbles in the ice resulted in a high albedo and under-ice irradiance declined faster than incident, the former falling below 1 W m-2 (daily average) by early April. After two months of ice formation, only 0–15% of the volume of each pond was still liquid, although this represented 5–35% of the pond sediment area, where much of the biological activity was concentrated. We suggest that the stresses that the freezing process imposes may be as important to structuring the biotic communities as those during the more benign summer growth period.

We observed ice formation and water column attributes in four shallow Antarctic ponds between January and 7 April 2008. During that time ponds went from ice-free to > 80 cm thick ice, near-freshwater to hypersaline, well-lit to near darkness and temperatures fell to below zero. Here we examine shifts in biological activity that accompanied these changes. During February, freeze-concentration and ongoing photosynthesis increased dissolved oxygen concentration to up to 100 mg l-1, with a near-equivalent decrease in dissolved inorganic carbon and a pH rise. Benthic photosynthesis was responsible for 99% of estimated biological oxygen production. Net oxygen accumulation ceased in late February, pH began to fall and inorganic carbon to increase, but the pool of dissolved oxygen was depleted only slowly. Anoxia had been attained in only one pond by April and there was little accumulation of indicators of anaerobic activity. The nitrogen and phosphorus balances of the ponds were dominated by organic forms, which, like DOC and CDOM, behaved conservatively. Conversely, inorganic nitrogen and phosphorus uptake was evident throughout the study period, at a molar ratio of 16N:1P in two of three ponds, consistent with uptake into biological material. We found no coupling between N and P uptake and photosynthesis.

After a decade of research, New Zealand’s Latitudinal Gradient Project (LGP) now includes primary sites from Cape Hallett (72°S) to the Darwin Glacier (80°S), while additional observations extend the latitudinal transect from 84°S to sub-Antarctic regions. The LGP has been structured around a hypothesis that, in a frigid continent, ice dynamics is the key ecosystem variable. For terrestrial environments, two aspects of ice dynamics appear to underlie much of the observed variability. Firstly, the aridity of the region makes the transition from ice to water a key ecological factor, and secondly, the legacy of ice dynamics dating as far back as the Pliocene is imprinted on biogeography. These factors operate at difference temporal and spatial scales and neither is monotonically related to latitude. Both are also complicated by meso-scale cross gradients of altitude and distance from the sea and micro-scale local variability. Whilst climate does vary on a broad-scale, differences within the northern and central parts of Victoria Land that the LGP has so far examined are insufficient to impose any overarching effect that can overwhelm these more local effects. The result is a multiple-scale patchwork of habitats and communities, more or less replicated across the transect, in which variability at any given latitude generally exceeds variability between latitudes. A lesser quantum of research has been directed at marine ecosystems, but here there is a similar picture of local variability dominating within the Ross Sea, with significant latitude-scale effects only emerging when transects are extended into maritime- and sub-Antarctic regions. It is implicit, but not specifically recognized in the LGP context, that a further confounding effect on the interpretation of ‘transect’ information is the multiple stressor concept that requires a simultaneous analysis of interacting (synergistic or antagonistic) factors and environmental responses. As the LGP continues to extend further south, climate is expected to become more extreme, and water availability may change sufficiently for loss of habitat and species diversity to occur. Here we discuss options for refining the LGP approach to optimize its potential for understanding variability, and the factors underpinning this, in the Ross Sea Sector.

In this review we consider the physical processes that shape inland aquatic ecosystems and how these affect ecosystem processes, with particular focus on the nitrogen cycle. Inland Antarctica is dominated by microbial communities that are usually concentrated in, or adjacent to, habitats with free water. The presence of free vs frozen water is dependent on very small changes in temperature around 0°C, so significant variability in the distribution of free water can be expected in response to variations in climate over diel, decadal, to millennial time scales and a range of spatial scales. Antarctic inland waters take many forms: snow-surface melt pockets, cryoconites, basal regions of wet-based glaciers, ponds (varying in salinity and degree of desiccation), melt streams, perennially and seasonally ice covered lakes and even hypersaline, ice free lakes. The important processes and transformations that characterize the nitrogen cycle worldwide have all been identified in Antarctic inland waters and in some cases (e.g. N-uptake, N-fixation), rates are similar to those at lower latitudes. The unique features of Antarctic ecosystems stem from the extreme and variable physical conditions under which these processes operate rather than any unique ecosystem processes per se.

A model was used to simulate primary production of benthic microbial mats in Lake Hoare, southern Victoria Land, Antarctica, and to compare potential benthic to planktonic production. Photosynthetic and respiratory characteristics of mats from five depths in the lake were extrapolated across depth, surface area and time, to estimate whole-lake, annual net primary production. Variation in under-ice light regimes resulting from changes in ice thickness and transparency, and light extinction in the water column was examined, and an uncertainty analysis of key model parameters performed. Daily mat production estimates were 0.98–37.83 mg C m−2 d−1, depending on depth and PAR, whereas in situ production of phytoplankton averaged 15% of this. Annual patterns of mat production achieved maximum rates of 15–16 g C m−2 y−1 at 10 m depth when ≥ 5% of ambient PAR was transmitted through the ice covering the lake; observed transmittance values were usually ≤ 5%. Increasing underwater PAR had little effect above 5–7% transmittance, as photosynthesis became saturated at this level. Uncertainties in estimates of maximum photosynthetic rate (Pmax), initial slope of photosynthetic-light response (α) and maximum respiration rate (Rmax) explained 72–99% of uncertainty in model behaviour; Pmax was increasingly important at high light levels whereas α was more important at low light levels, however Rmax exerted the greatest influence under most conditions.

The freshwater streams of James Ross Island share many of the features common to other Antarctic streams. There is a diel variation in temperature and discharge, which follows the daily insolation cycle; catchments are barren; stream vegetation is predominantly algal, comprising mat-forming cyanobacteria and filamentous chlorophytes; and physical factors, particularly turbidity and bed stability are important in determining biomass and composition of algal assemblages. Nutrient concentrations vary from stream to stream and over a diel cycle, with minimum dissolved N in late afternoon. Biomass attained and photosynthetic and respiratory rates are also comparable to those recorded in other Antarctic streams, with low productivity/biomass ratios in perennial assemblages.

Lake Wilson, a perennially ice-capped, deep (>100 m) lake at 80°S in southern Victoria Land was investigated in January 1993. Water chemistry and physical structure showed three distinct layers; an upper c. 35 m mixed layer of low salinity, moderately turbid water; a less turbid mid layer, 20 m thick of slightly higher salinity and supersaturated with oxygen; and a deep 20 m brackish layer (conductivity c. 4000 μS cm−1) with anoxic conditions in the lower 5 m. Extreme supersaturation of N2O (up to 400 times air saturation) together with high nitrate concentration (4000 mg m−3) was recorded in the deep layer. Phytoplankton biomass and photosynthetic activity was confined to the upper mixed layer and the band of supersaturated dissolved oxygen located at 40–55 m appears to represent a relict layer from when the lake level was lower. The evidence from a comparison of profiles between 1975 and 1993 suggests that Lake Wilson has risen 25 m since 1975, synchronous with a period of lake level rise in the McMurdo Dry Valleys lakes to the north at 77°S. Geochemical diffusion models indicate that Lake Wilson had evaporated to a smaller brine lake about 1000 yrs BP, which also fits the pattern shown by the McMurdo Dry Valleys lakes. Climate changes influencing lake levels have thus covered a wide area of southern Victoria Land.