The spread of the Zika virus (ZIKV) in the Americas led to large outbreaks across the region and most of the Southern hemisphere. Of greatest concern were complications following acute infection during pregnancy. At the beginning of the outbreak, the risk to unborn babies and their clinical presentation was unclear. This report describes the methods and results of the UK surveillance response to assess the risk of ZIKV to children born to returning travellers. Established surveillance systems operating within the UK – the paediatric and obstetric surveillance units for rare diseases, and national laboratory monitoring – enabled rapid assessment of this emerging public health threat. A combined total of 11 women experiencing adverse pregnancy outcomes after possible ZIKV exposure were reported by the three surveillance systems; five miscarriages, two intrauterine deaths and four children with clinical presentations potentially associated with ZIKV infection. Sixteen women were diagnosed with ZIKV during pregnancy in the UK. Amongst the offspring of these women, there was unequivocal laboratory evidence of infection in only one child. In the UK, the number and risk of congenital ZIKV infection for travellers returning from ZIKV-affected countries is very small.

We describe the parameters of a low-frequency all-sky survey of compact radio sources using Interplanetary Scintillation, undertaken with the Murchison Widefield Array. While this survey gives important complementary information to low-resolution survey, providing information on the sub-arsecond structure of every source, a survey of this kind has not been attempted in the era of low-frequency imaging arrays such as the Murchison Widefield Array and LOw Frequency Array. Here we set out the capabilities of such a survey, describing the limitations imposed by the heliocentric observing geometry and by the instrument itself. We demonstrate the potential for Interplanetary Scintillation measurements at any point on the celestial sphere and we show that at 160 MHz, reasonable results can be obtained within 30° of the ecliptic (2π str: half the sky). We also suggest some observational strategies and describe the first such survey, the Murchison Widefield Array Phase I Interplanetary Scintillation survey. Finally we analyse the potential of the recently upgraded Murchison Widefield Array and discuss the potential of the Square Kilometre Array-low to use Interplanetary Scintillation to probe sub-mJy flux density levels at sub-arcsecond angular resolution.

Antibodies at gastrointestinal mucosal membranes play a vital role in immunological protection against a range of pathogens, including helminths. Gastrointestinal health is central to efficient livestock production, and such infections cause significant losses. Fecal samples were taken from 114 cattle, across three beef farms, with matched blood samples taken from 22 of those animals. To achieve fecal antibody detection, a novel fecal supernatant was extracted. Fecal supernatant and serum samples were then analysed, using adapted enzyme-linked immunosorbent assay protocols, for levels of total immunoglobulin (Ig)A, IgG, IgM, and Teladorsagia circumcincta-specific IgA, IgG, IgM and IgE (in the absence of reagents for cattle-specific nematode species). Fecal nematode egg counts were conducted on all fecal samples. Assays performed successfully and showed that IgA was the predominant antibody in fecal samples, whereas IgG was predominant in serum. Total IgA in feces and serum correlated within individuals (0.581, P = 0.005), but other Ig types did not. Results support the hypothesis that the tested protocols are an effective method for the non-invasive assessment of cattle immunology. The method could be used as part of animal health assessments, although further work is required to interpret the relationship between results and levels of infection and immunity.

The Murchison Widefield Array (MWA), located in Western Australia, is one of the low-frequency precursors of the international Square Kilometre Array (SKA) project. In addition to pursuing its own ambitious science programme, it is also a testbed for wide range of future SKA activities ranging from hardware, software to data analysis. The key science programmes for the MWA and SKA require very high dynamic ranges, which challenges calibration and imaging systems. Correct calibration of the instrument and accurate measurements of source flux densities and polarisations require precise characterisation of the telescope’s primary beam. Recent results from the MWA GaLactic Extragalactic All-sky Murchison Widefield Array (GLEAM) survey show that the previously implemented Average Embedded Element (AEE) model still leaves residual polarisations errors of up to 10–20% in Stokes Q. We present a new simulation-based Full Embedded Element (FEE) model which is the most rigorous realisation yet of the MWA’s primary beam model. It enables efficient calculation of the MWA beam response in arbitrary directions without necessity of spatial interpolation. In the new model, every dipole in the MWA tile (4 × 4 bow-tie dipoles) is simulated separately, taking into account all mutual coupling, ground screen, and soil effects, and therefore accounts for the different properties of the individual dipoles within a tile. We have applied the FEE beam model to GLEAM observations at 200–231 MHz and used false Stokes parameter leakage as a metric to compare the models. We have determined that the FEE model reduced the magnitude and declination-dependent behaviour of false polarisation in Stokes Q and V while retaining low levels of false polarisation in Stokes U.

Rhinanthus minor is a facultative hemiparasitic plant of the Scrophulariaceae family native to the British Isles. It is typically found in meadows associated with a high floristic diversity, but it can also be found in pasture, where it is susceptible to heavy grazing. Containing the iridoid glycoside rhinanthin (C29H52O20), R. minor is strongly suspected of being poisonous, but it is not clear how harmful this is to livestock (Long 1924). Through parasitism, particularly of the grasses, R. minor is also associated with a loss of grazing. Consequently, the presence of R. minor in a sward is often viewed negatively. However, through reductions in productivity of grasses, R. minor may have a role in the restoration of species-rich grasslands. As a result, the probability of cattle consuming R. minor might be expected to increase. This paper aims to evaluate the degradation of R. minor and discusses the implications of R. minor inclusion in the diet.

As part of “Rumen-Up”, an EU Framework 5 project, a total of 500 plants and plant extracts were screened in vitro for their effect on general rumen fermentation parameters, in particular their ability to influence microbial protein production, protozoal numbers, methane production, bloat and acidosis. Many of the plants investigated were found to have potentially beneficial effects with respect to ruminant production. The activities of 25 plants were patented, including two that The University of Reading identified as maintaining a significantly higher fermentation medium pH - common lettuce (Lactuca sativa) and stinging nettle ( Urtica dioica) with the aim that these plants (or their derivatives) would be incorporated as feed supplements to reduce the incidence of rumen acidosis. The results reported here are from an in vitro dose titration study conducted to identify possible dietary inclusion levels prior to conducting a large-scale animal production study.

As part of the EU Framework 5 project “Rumen-Up”, plants were screened for their effect on the in vitro fermentation medium pH. Common lettuce (Lactuca sativa) and stinging nettle (Urtica dioica) were identified as having a positive effect, maintaining a higher pH when fermented with wheat over 48 hours. It was considered that the rumen microflora may adapt to the inclusion of either plant in the diet, leading to negation of the effect, and therefore reducing the opportunities for use as a supplement to prevent acidosis. This study was designed to investigate the persistency of the anti-acidosis effect using the Rumen Simulation Technique (RUSITEC), together with batch in vitro fermentation using inoculum harvested from RUSITEC.

The buffered incubation medium used in many in vitro ruminant feedstuff degradation assays is essentially that described by Goering and Van Soest [1970]. Hungate [1966] suggested that the actual composition of the inorganic salts in the medium was not vital as long as it provided sufficient buffering capacity and was of a similar osmotic potential to rumen fluid, while Tilley and Terry [1963] argued that sufficient trace elements and “growth stimulants” would be provided by the rumen fluid inoculum or substrate and that fermentation gas would maintain anaerobic conditions. The divergent composition of these media reflects that the microbiologists were attempting to create a “habitat-simulating” media [Hungate, 1966] while nutritionists were using a slightly modified rumen environment in vitro to permit microbial degradation of feedstuffs. The objectives of this study were to identify whether reduction of media is necessary prior to use, and to develop a nitrogen free media which could be used for determining the effects of nitrogen supplementation on the fermentation of feedstuffs.

Many reports indicate that mixed microbial populations preferentially incorporate peptides or NH4 + rather than free amino acids [e.g. Pittman and Bryant, 1964]. As part of a study to evaluate a novel encapsulation process, an in vitro technique to examine amino acid degradation was developed using a compliment test based on the Reading Pressure Technique [Mauricio et al., 1999]. In this methodology, the ability of rumen microorganisms to ferment a pure carbohydrate substrate in a nitrogen-deficient medium was significantly correlated to the level of available nitrogen. It therefore followed that fermentation gas release could be used as a simple technique to examine and quantify nitrogen availability. The study described compared three nitrogen sources offered either alone or in combination.

Escherichia coli O157 are zoonotic bacteria for which cattle are an important reservoir. Prevalence estimates for E. coli O157 in British cattle for human consumption are over 10 years old. A new baseline is needed to inform current human health risk. The British E. coli O157 in Cattle Study (BECS) ran between September 2014 and November 2015 on 270 farms across Scotland and England & Wales. This is the first study to be conducted contemporaneously across Great Britain, thus enabling comparison between Scotland and England & Wales. Herd-level prevalence estimates for E. coli O157 did not differ significantly for Scotland (0·236, 95% CI 0·166–0·325) and England & Wales (0·213, 95% CI 0·156–0·283) (P = 0·65). The majority of isolates were verocytotoxin positive. A higher proportion of samples from Scotland were in the super-shedder category, though there was no difference between the surveys in the likelihood of a positive farm having at least one super-shedder sample. E. coli O157 continues to be common in British beef cattle, reaffirming public health policy that contact with cattle and their environments is a potential infection source.

We present techniques developed to calibrate and correct Murchison Widefield Array low-frequency (72–300 MHz) radio observations for polarimetry. The extremely wide field-of-view, excellent instantaneous (u, v)-coverage and sensitivity to degree-scale structure that the Murchison Widefield Array provides enable instrumental calibration, removal of instrumental artefacts, and correction for ionospheric Faraday rotation through imaging techniques. With the demonstrated polarimetric capabilities of the Murchison Widefield Array, we discuss future directions for polarimetric science at low frequencies to answer outstanding questions relating to polarised source counts, source depolarisation, pulsar science, low-mass stars, exoplanets, the nature of the interstellar and intergalactic media, and the solar environment.

The current generation of experiments aiming to detect the neutral hydrogen signal from the Epoch of Reionisation (EoR) is likely to be limited by systematic effects associated with removing foreground sources from target fields. In this paper, we develop a model for the compact foreground sources in one of the target fields of the MWA’s EoR key science experiment: the ‘EoR1’ field. The model is based on both the MWA’s GLEAM survey and GMRT 150 MHz data from the TGSS survey, the latter providing higher angular resolution and better astrometric accuracy for compact sources than is available from the MWA alone. The model contains 5 049 sources, some of which have complicated morphology in MWA data, Fornax A being the most complex. The higher resolution data show that 13% of sources that appear point-like to the MWA have complicated morphology such as double and quad structure, with a typical separation of 33 arcsec. We derive an analytic expression for the error introduced into the EoR two-dimensional power spectrum due to peeling close double sources as single point sources and show that for the measured source properties, the error in the power spectrum is confined to high k ⊥ modes that do not affect the overall result for the large-scale cosmological signal of interest. The brightest 10 mis-modelled sources in the field contribute 90% of the power bias in the data, suggesting that it is most critical to improve the models of the brightest sources. With this hybrid model, we reprocess data from the EoR1 field and show a maximum of 8% improved calibration accuracy and a factor of two reduction in residual power in k-space from peeling these sources. Implications for future EoR experiments including the SKA are discussed in relation to the improvements obtained.

We present low-frequency spectral energy distributions of 60 known radio pulsars observed with the Murchison Widefield Array telescope. We searched the GaLactic and Extragalactic All-sky Murchison Widefield Array survey images for 200-MHz continuum radio emission at the position of all pulsars in the Australia Telescope National Facility (ATNF) pulsar catalogue. For the 60 confirmed detections, we have measured flux densities in 20 × 8 MHz bands between 72 and 231 MHz. We compare our results to existing measurements and show that the Murchison Widefield Array flux densities are in good agreement.

The order of the authors in the published article is incorrect. The authors should appear as follows:

J. Schneider, B. Cornwell, A. Jonas, R. Behler, N. Lancki, B. Skaathun, L. E. Young, E. Morgan, S. Michaels, R. Duvoisin, A. S. Khanna, S. Friedman, P. Schumm, E. Laumann, for the uConnect Study Team

The authors regret the error.

Critical to the development of improved HIV elimination efforts is a greater understanding of how social networks and their dynamics are related to HIV risk and prevention. In this paper, we examine network stability of confidant and sexual networks among young black men who have sex with men (YBMSM). We use data from uConnect (2013–2016), a population-based, longitudinal cohort study. We use an innovative approach to measure both sexual and confidant network stability at three time points, and examine the relationship between each type of stability and HIV risk and prevention behaviors. This approach is consistent with a co-evolutionary perspective in which behavior is not only affected by static properties of an individual's network, but may also be associated with changes in the topology of his or her egocentric network. Our results indicate that although confidant and sexual network stability are moderately correlated, their dynamics are distinct with different predictors and differing associations with behavior. Both types of stability are associated with lower rates of risk behaviors, and both are reduced among those who have spent time in jail. Public health awareness and engagement with both types of networks may provide new opportunities for HIV prevention interventions.

A comprehensive, airborne survey of the Vanderford and Adams glaciers was started in January 1983, continued through the austral summer season 1984/5, and completed in February 1985.

Ice-thickness and surface-elevation data were collected over some 4500 square kilometres, on a grid spacing of approximately 5 kilometres.

The measurement system was based on a Bell 206 helicopter, fitted with ANARE 100 MHz ice radar, Motorola Mini-Ranger navigation equipment, and a digital, pressure altimeter. A JMR, satellite, doppler receiver was used to position the navigation ground stations precisely. Gravity measurements were used to fill in ice-thickness coverage, where the ice radar failed to produce an echo and also to help determine where the glacier was floating.

Ice-movement profiles were measured across the front sections of the glaciers and additional spot values were obtained further upstream by utilizing the 3 m accuracy of the navigation equipment to locate markers quickly at both the beginning and end of the season’s work.

A data logger in the helicopter recorded time, navigation distances, aircraft to ground clearance, and air pressure, at 10 second intervals. These data were later merged with manually-scaled, ice-thickness values, for computer processing.

The results show that the Vanderford glacier dominates the system and drains about 5 cubic kilometres of ice per annum, mainly from the inland ice sheet to the south. Ice flowing into the Adams Glacier tends to come from nearer the coast and to the south and west of the glacier. Bedrock topography beneath the Vanderford shows that the deep, inland trench, similar to that found below other outlet glaciers, drops to 2500 m below sea level, 60 kilometres from the front. The trench has steep sides to the east and gives a clearly-defined edge to the fast glacier flow. The western side, however, is much more complicated, particularly further inland, where the flow is not clearly separate from that of the Adams glacier.

We estimate spatial gradients in the ionosphere using the Global Positioning System and GLONASS (Russian global navigation system) observations, utilising data from multiple Global Positioning System stations in the vicinity of Murchison Radio-astronomy Observatory. In previous work, the ionosphere was characterised using a single-station to model the ionosphere as a single layer of fixed height and this was compared with ionospheric data derived from radio astronomy observations obtained from the Murchison Widefield Array. Having made improvements to our data quality (via cycle slip detection and repair) and incorporating data from the GLONASS system, we now present a multi-station approach. These two developments significantly improve our modelling of the ionosphere. We also explore the effects of a variable-height model. We conclude that modelling the small-scale features in the ionosphere that have been observed with the MWA will require a much denser network of Global Navigation Satellite System stations than is currently available at the Murchison Radio-astronomy Observatory.

Supplementing dairy cow diets with oilseed preparations has been shown to replace milk saturated fatty acids (SFA) with mono- and/or polyunsaturated fatty acids (MUFA, PUFA), which may reduce risk factors associated with cardio-metabolic diseases in humans consuming milk and dairy products. Previous studies demonstrating this are largely detailed, highly controlled experiments involving small numbers of animals, but in order to transfer this feeding strategy to commercial situations further studies are required involving whole herds varying in management practices. In experiment 1, three oilseed supplements (extruded linseed (EL), calcium salts of palm and linseed oil (CPLO) and milled rapeseed (MR)) were included in grass silage-based diets formulated to provide cows with ~350 g oil/day, and compared with a negative control (Control) diet containing no supplemental fat, and a positive control diet containing 350 g/cow per day oil as calcium salt of palm oil distillate (CPO). Diets were fed for 28-day periods in a 5×4 Latin Square design, and milk production, composition and fatty acid (FA) profile were analysed at the end of each period. Compared with Control, all lipid supplemented diets decreased milk fat SFA concentration by an average of 3.5 g/100 g FA, by replacement with both cis- and trans-MUFA/PUFA. Compared with CPO, only CPLO and MR resulted in lower milk SFA concentrations. In experiment 2, 24 commercial dairy farms (average herd size±SEM 191±19.3) from the south west of the United Kingdom were recruited and for a 1 month period asked to supplement their herd diets with either CPO, EL, CPLO or MR at the same inclusion level as the first study. Bulk tank milk was analysed weekly to determine FA concentration by Fourier Transform mid-IR spectroscopy prediction. After 4 weeks, EL, CPLO and MR all decreased herd milk SFA and increased MUFA to a similar extent (average −3.4 and +2.4 g/100 g FA, respectively) when compared with CPO. Differing responses observed between experiments 1 and 2 may be due in part to variations in farm management conditions (including basal diet) in experiment 2. This study demonstrates the importance of applying experimental research into commercial practice where variations in background conditions can augment different effects to those obtained under controlled conditions.

The stellar associations are defined as loose unbound concentrations of young stars with a bright OB stellar component, mainly located at the most recent star forming regions, representing the smallest units in the hierarchy of stellar systems in galaxies. The definition of the associations is discussed and the main properties of their stellar content are summarized. Using plates taken with the 1.2m UK Schmidt Telescope a method is developed to detect all stellar associations in the LMC and to find their spatial distribution relative to the LMC's recent star formation history. In 40% of the LMC region, the number of “single peak” associations has increased considerably (~ 3x). A very interesting result is that the faint limit, where the identified associations are revealed, varies by about 3 mag. This indicates not only extinction differences but also the presence of pre-main sequence stars at a wide range of masses.

We have compiled a catalogue of H ii regions detected with the Murchison Widefield Array between 72 and 231 MHz. The multiple frequency bands provided by the Murchison Widefield Array allow us identify the characteristic spectrum generated by the thermal Bremsstrahlung process in H ii regions. We detect 306 H ii regions between 260° < l < 340° and report on the positions, sizes, peak, integrated flux density, and spectral indices of these H ii regions. By identifying the point at which H ii regions transition from the optically thin to thick regime, we derive the physical properties including the electron density, ionised gas mass, and ionising photon flux, towards 61 H ii regions. This catalogue of H ii regions represents the most extensive and uniform low frequency survey of H ii regions in the Galaxy to date.