Understanding place-based contributors to health requires geographically and culturally diverse study populations, but sharing location data is a significant challenge to multisite studies. Here, we describe a standardized and reproducible method to perform geospatial analyses for multisite studies. Using census tract-level information, we created software for geocoding and geospatial data linkage that was distributed to a consortium of birth cohorts located throughout the USA. Individual sites performed geospatial linkages and returned tract-level information for 8810 children to a central site for analyses. Our generalizable approach demonstrates the feasibility of geospatial analyses across study sites to promote collaborative translational research.

In recent years, a variety of efforts have been made in political science to enable, encourage, or require scholars to be more open and explicit about the bases of their empirical claims and, in turn, make those claims more readily evaluable by others. While qualitative scholars have long taken an interest in making their research open, reflexive, and systematic, the recent push for overarching transparency norms and requirements has provoked serious concern within qualitative research communities and raised fundamental questions about the meaning, value, costs, and intellectual relevance of transparency for qualitative inquiry. In this Perspectives Reflection, we crystallize the central findings of a three-year deliberative process—the Qualitative Transparency Deliberations (QTD)—involving hundreds of political scientists in a broad discussion of these issues. Following an overview of the process and the key insights that emerged, we present summaries of the QTD Working Groups’ final reports. Drawing on a series of public, online conversations that unfolded at www.qualtd.net, the reports unpack transparency’s promise, practicalities, risks, and limitations in relation to different qualitative methodologies, forms of evidence, and research contexts. Taken as a whole, these reports—the full versions of which can be found in the Supplementary Materials—offer practical guidance to scholars designing and implementing qualitative research, and to editors, reviewers, and funders seeking to develop criteria of evaluation that are appropriate—as understood by relevant research communities—to the forms of inquiry being assessed. We dedicate this Reflection to the memory of our coauthor and QTD working group leader Kendra Koivu.1

We surveyed resident physicians at 2 academic medical centers regarding urinary testing and treatment as they progressed through training. Demographics and self-reported confidence were compared to overall knowledge using clinical vignette-based questions. Overall knowledge was 40% in 2011 and increased to 48%, 55%, and 63% in subsequent years (P<.001).

Infect Control Hosp Epidemiol 2018;39:616–618

Common lambsquarters tolerance to glyphosate is problematic because of the species' widespread distribution, competitive ability with many crop species, the widespread use of glyphosate in agriculture, and the weed's potential to develop decreased sensitivity to multiple herbicide sites of action. The mechanism that confers common lambsquarters tolerance to glyphosate is not known. Therefore, we conducted experiments to determine the mechanism of tolerance to glyphosate in an accession of common lambsquarters from Indiana relative to a sensitive accession from Wisconsin. The ED50 (the effective dose that reduced shoot mass 50% relative to nontreated plants) value for the tolerant accession (1.6 kg ae ha−1 ± 0.4 standard error of the mean [SEM]) was eightfold greater than the ED50 for the sensitive accession (0.2 kg ae ha−1 ± 0.2 SEM) 28 d after treatment. The glyphosate target-site (EPSPS) DNA sequence at proline 106, shikimate accumulation as an estimate of EPSPS sensitivity, and EPSPS protein abundance did not differ between accessions. Absorption of 14C-glyphosate was slightly greater in the tolerant accession than it was in the sensitive accession at 48 and 72 h after treatment (HAT). However, the tolerant accession translocated a smaller percentage of absorbed 14C-glyphosate to the tissue above the treated leaf, which included the shoot apical meristem, at 24, 48, and 72 HAT (P ≤ 0.05, 0.01, and 0.10, respectively). These results suggest an important role of reduced translocation in conferring tolerance of common lambsquarters to glyphosate.

Biotypes of common lambsquarters with tolerance to glyphosate have been identified in a number of states, but little is known about their fitness characteristics. Field and greenhouse studies were conducted to characterize the response of selected glyphosate-tolerant common lambsquarters biotypes to glyphosate, and also their biological and reproductive characteristics. In a greenhouse dose-response study, GR50 and GR90 values for four tolerant biotypes ranged from 1.48 to 3.22 and 8.73 to 18.7 kg ae ha−1, respectively, compared to 0.57 and 2.39 kg ae ha−1, respectively, for a glyphosate-sensitive biotype. In a field dose-response study, the GR50 and GR90 values were 0.06 and 0.48 kg ae ha−1, respectively, for a tolerant biotype, compared to 0.036 and 0.19 kg ae ha−1, respectively, for the sensitive biotype. The growth rate, time until flowering, and seed production of eight tolerant and two sensitive biotypes was evaluated in a field study. The tolerant biotypes grew taller, amassed more leaf area and dry weight, and advanced through growth stages more rapidly than sensitive biotypes during the early portion of the growing season. The tolerant biotypes were taller than sensitive biotypes at 6 and 10 wk after transplanting, but had lower dry weight at maturity. Tolerant biotypes initiated flower primordia approximately 6 to 8 wk after transplanting, whereas sensitive biotypes required 12 wk. However, no apparent fitness penalties were observed in glyphosate-tolerant biotypes based on seed-production estimates.

Amaranthus species, commonly referred to as “pigweeds,” are among the most troublesome weeds in many crop production systems. Effective control of these species often begins with an understanding of their biological and reproductive characteristics. At two sites in Missouri, six pigweed species (redroot pigweed, common waterhemp, spiny amaranth, tumble pigweed, smooth pigweed, and Palmer amaranth) were established in 60-m rows spaced 1.5 m apart. At biweekly intervals, plant heights and dry weights were recorded for each species; seed numbers were estimated at the end of the growing season. Dry weight of Palmer amaranth was up to 65% greater than those of all other species 2 wk after planting (WAP). Palmer amaranth biomass accumulation remained greater than those of the other species throughout the season and at the end of the season was 1.2- and 2.7-fold greater than those of redroot and tumble pigweed, respectively. Palmer amaranth was approximately 10 cm tall 2 WAP (37% taller than the next tallest species, redroot pigweed) and approximately 24 cm tall 4 WAP (45% taller than redroot pigweed). In contrast, common waterhemp had not emerged 2 WAP, and plant dry weight 4 WAP was approximately 11 and 26% those of Palmer amaranth and redroot pigweed, respectively. Final plant height ranged from 58 (tumble pigweed) to 208 cm (Palmer amaranth). Redroot pigweed, smooth pigweed, common waterhemp, and Palmer amaranth plants each produced over 250,000 seeds plant−1. Spiny amaranth and tumble pigweed produced approximately 114,000 and 50,000 seeds plant−1, respectively. Common waterhemp produced 535 seeds g−1 of total plant dry weight; this seed production was 1.4-, 1.4-, 2.0-, 3.4-, and 3.4-fold greater than those of redroot pigweed, smooth pigweed, Palmer amaranth, tumble pigweed, and spiny amaranth, respectively. Because the timing for many postemergence herbicides depends on weed height, rapid growth shortly after emergence reduces the time frame for optimum control of species such as Palmer amaranth. Delayed emergence also could result in escaped common waterhemp. Escape of only a few plants could result in a rapid increase in seed populations in the soil seed bank and may select for late-emerging biotypes.

Field studies were conducted in 2000 and 2001 to evaluate corn yield-loss predictions generated by WeedSOFT, a computerized weed management decision aid. Conventional tillage practices were used to produce corn in 76-cm rows in Illinois, Indiana, Kansas, Michigan, Missouri, Nebraska, and Wisconsin. A total of 21 site-years from these seven states were evaluated in this study. At 4 wk after planting, weed densities and size, crop-growth stage, estimated weed-free yield, and environmental conditions at the time of application were entered into WeedSOFT to generate POST treatments ranked by percent maximum yield (PMY). POST treatments were chosen with yield losses ranging from 0 to 20%. Data were subjected to linear regression analysis by state and pooled over all states to determine the relationship between actual and predicted yield loss. A slope value equal to one implies perfect agreement between actual and predicted yield loss. Slope value estimates for Illinois and Missouri were equal to one. Actual yield losses were higher than the software predicted in Kansas and lower than predicted in Michigan, Nebraska, and Wisconsin. Slope value estimate from a data set containing all site years was equal to one. This research demonstrated that variability in yield-loss predictions occurred at sites that contained a high density of a single weed specie (>100/m2) regardless of its competitive index (CI); at sites with a predominant broadleaf weed with a CI greater than five, such as Palmer amaranth, giant ragweed, common sunflower, and common cocklebur; and at sites that experience moderate to severe drought stress.

Volcanic eruptions commonly produce buoyant ash-laden plumes that rise through the stratified atmosphere. On reaching their level of neutral buoyancy, these plumes cease rising and transition to horizontally spreading intrusions. Such intrusions occur widely in density-stratified fluid environments, and in this paper we develop a shallow-layer model that governs their motion. We couple this dynamical model to a model for particle transport and sedimentation, to predict both the time-dependent distribution of ash within volcanic intrusions and the flux of ash that falls towards the ground. In an otherwise quiescent atmosphere, the intrusions spread axisymmetrically. We find that the buoyancy-inertial scalings previously identified for continuously supplied axisymmetric intrusions are not realised by solutions of the governing equations. By calculating asymptotic solutions to our model we show that the flow is not self-similar, but is instead time-dependent only in a narrow region at the front of the intrusion. This non-self-similar behaviour results in the radius of the intrusion growing with time $t$ as $t^{3/4}$, rather than $t^{2/3}$ as suggested previously. We also identify a transition to drag-dominated flow, which is described by a similarity solution with radial growth now proportional to $t^{5/9}$. In the presence of an ambient wind, intrusions are not axisymmetric. Instead, they are predominantly advected downstream, while at the same time spreading laterally and thinning vertically due to persistent buoyancy forces. We show that close to the source, this lateral spreading is in a buoyancy-inertial regime, whereas far downwind, the horizontal buoyancy forces that drive the spreading are balanced by drag. Our results emphasise the important role of buoyancy-driven spreading, even at large distances from the source, in the formation of the flowing thin horizontally extensive layers of ash that form in the atmosphere as a result of volcanic eruptions.

Fruit and vegetable consumption is associated with improved health outcomes, yet there is limited understanding of the impact of cost and accessibility on fruit and vegetable intake in rural settings. This study examines the relationship between the consumption of fruits and vegetables and their cost and accessibility among blacks and non-Hispanic whites in a rural area. Individual characteristics from a 2006 mail survey (n = 1,510) were combined with store locations and price information from a 2006 ground-truthed census of retail outlets. The mail survey covered seven counties in central Texas with 38 supermarkets/grocery stores. Blacks tended to live closer to a supermarket or grocery store, but they were only slightly more likely than whites to consume two or more servings of fruit daily and much less likely to consume three or more servings of vegetables. Multivariate probit regression analysis revealed that neither access nor cost was related to fruit or vegetable consumption among white respondents. Among blacks, cost was also not associated with consumption. In contrast to whites, however, each additional mile was associated with a three percentage point decline in the probability of consuming two or more servings of fruit daily and a 1.8 percentage point decline in the probability of consuming three or more vegetable servings.

Fluid mechanics plays a vital role in early vertebrate embryo development, an example being the establishment of left–right asymmetry. Following the dorsal–ventral and anterior–posterior axes, the left–right axis is the last to be established; in several species it has been shown that an important process involved with this is the production of a left–right asymmetric flow driven by ‘whirling’ cilia. It has previously been established in experimental and mathematical models of the mouse ventral node that the combination of a consistent rotational direction and posterior tilt creates left–right asymmetric flow. The zebrafish organizing structure, Kupffer’s vesicle, has a more complex internal arrangement of cilia than the mouse ventral node; experimental studies show that the flow exhibits an anticlockwise rotational motion when viewing the embryo from the dorsal roof, looking in the ventral direction. Reports of the arrangement and configuration of cilia suggest two possible mechanisms for the generation of this flow from existing axis information: (a) posterior tilt combined with increased cilia density on the dorsal roof; and (b) dorsal tilt of ‘equatorial’ cilia. We develop a mathematical model of symmetry breaking cilia-driven flow in Kupffer’s vesicle using the regularized Stokeslet boundary element method. Computations of the flow produced by tilted whirling cilia in an enclosed domain suggest that a possible mechanism capable of producing the flow field with qualitative and quantitative features closest to those observed experimentally is a combination of posteriorly tilted roof and floor cilia, and dorsally tilted equatorial cilia.