α1-Microglobulin (α1m)
is an electrophoretically heterogeneous plasma protein.
It belongs to the lipocalin superfamily, a group of proteins
with a three-dimensional (3D) structure that forms an internal
hydrophobic ligand-binding pocket. α1m carries
a covalently linked unidentified chromophore that gives
the protein a characteristic brown color and extremely
heterogeneous optical properties. Twenty-one different
colored tryptic peptides corresponding to residues 88–94,
118–121, and 122–134 of human α1m
were purified. In these peptides, the side chains of Lys92,
Lys118, and Lys130 carried size heterogeneous, covalently
attached, unidentified chromophores with molecular masses
between 122 and 282 atomic mass units (amu). In addition,
a previously unknown uncolored lipophilic 282 amu compound
was found strongly, but noncovalently associated with the
colored peptides. Uncolored tryptic peptides containing
the same Lys residues were also purified. These peptides
did not carry any additional mass (i.e., chromophore) suggesting
that only a fraction of the Lys92, Lys118, and Lys130 are
modified. The results can explain the size, charge, and
optical heterogeneity of α1m. A 3D model
of α1m, based on the structure of rat epididymal
retinoic acid-binding protein (ERABP), suggests that Lys92,
Lys118, and Lys130 are semiburied near the entrance of
the lipocalin pocket. This was supported by the fluorescence
spectra of α1m under native and denatured
conditions, which indicated that the chromophores are buried,
or semiburied, in the interior of the protein. In human
plasma, approximately 50% of α1m is complex
bound to IgA. Only the free α1m carried
colored groups, whereas α1m linked to IgA
was uncolored.