Stand structure and tree species diversity patterns were examined plot-wide and among four topographically defined habitats (plateau, cliff, low plain and depressions) in a 120-ha permanent plot in an Acacia-dominated savanna in Mpala Ranch, central Kenya. The four habitats were defined by clustering the 3000 quadrats of 20 × 20 m in the plot based on their altitude, slope and convexity. Structural and floristic differences among the four habitats were examined and species-habitat associations were tested for the 30 most abundant species using torus translation randomization tests. The plot included 113 337 trees in 62 species with diameter at knee height ≥ 2 cm (18.4 species ha−1), 41 genera and 23 families. Fabaceae with the genus Acacia were the dominant family, followed by Euphorbiaceae and Ebenaceae. Tree density and basal area were twice as high on low plain and depressions than on the plateau. Species richness was highest in the cliff and was seven times higher than in the adjacent plateau. Half of the species assessed showed significant positive associations with one habitat and 21 showed significant negative associations with at least one habitat. The variation in stand structure and tree species diversity within the Mpala plot shows that topography is among the important drivers of local species distribution and hence the maintenance of tree diversity in savannas.

We monitored native forest regeneration over 11 y in a eucalyptus plantation and compared it with the neighbouring primary forest. For the plantation forest, we hypothesized that species richness, density, basal area and densities of old-growth species would increase over time, and compared to the primary forest, plantation forest would have higher species richness and density, but lower densities of old-growth species. In 2016, we repeated the protocol of a study that sampled the plantation forest in 2005, with thirty 10 × 10-m plots and enumerating trees (≥10 cm diameter), saplings (>1 to <10 cm diameter) and seedlings (<1 cm diameter). In the plantation forest, for trees, the species richness, density of gap, bird-dispersed and mammal-dispersed species increased by 67%, 156%, 116% and 238% respectively; whereas for saplings, density of gap, bird-dispersed and small-seeded species declined by 45.2%, 51% and 18.2% respectively over time; and seedling densities did not change across functional groups. Stand basal area increased by 80.1% in the plantation forest. The primary forest had 446% greater density of closed-canopy trees compared with plantation forest. Contrary to our prediction, the plantation forest did not accumulate significant densities of old-growth species over time, probably due to demographic filters that prevent them from attaining maturity.

Temporal and spatial scarcity of water in semi-arid and seasonal ecosystems often leads to changes in movements and behaviour of large vertebrates, and in the neotropics this dynamic is poorly understood due to logistical and methodological limitations. Here we used camera trapping to elucidate variation in patterns of seasonal use of waterholes and pathways by 10 large-mammal and four large-bird species in the dry forest of north-western Costa Rica. From 2011 to 2015, we deployed trail cameras at 50 locations, including waterholes and three types of pathway (roads, human trails and animal paths). We used Generalized Linear Models to evaluate the effect of location and seasonality on the rates at which independent photographs were taken. We found interacting effects of location and seasonality for the capuchin monkey (Cebus capucinus), the tiger heron (Trigrisoma mexicanum), the white-tailed deer (Odocoileus virginianus) and the tapir (Tapirus bairdii) suggesting that these species were the most influenced by waterholes during the dry season. Comparison of waterhole sites and specific types of pathways (roads, animal paths and human trails) showed that location influenced photo-capture rates of almost all species, suggesting a useful insight to avoid and account for bias in camera trap studies. Furthering our ecological understanding of seasonal water regimes and large vertebrates’ behaviours allow for better understanding of the consequences of climate change on them.

Differential tree seedling recruitment across forest-savanna ecotones is poorly understood, but hypothesized to be influenced by vegetation cover and associated factors. In a 3-y-long field transplant experiment in the forest-savanna ecotone of Ghana, we assessed performance and root allocation of 864 seedlings for two forest (Khaya ivorensis and Terminalia superba) and two savanna (Khaya senegalensis and Terminalia macroptera) species in savanna woodland, closed-woodland and forest. Herbaceous vegetation biomass was significantly higher in savanna woodland (1.0 ± 0.4 kg m−2 vs 0.2 ± 0.1 kg m−2 in forest) and hence expected fire intensities, while some soil properties were improved in forest. Regardless, seedling survival declined significantly in the first-year dry-season for all species with huge declines for the forest species (50% vs 6% for Khaya and 16% vs 2% for Terminalia) by year 2. After 3 y, only savanna species survived in savanna woodland. However, best performance for savanna Khaya was in forest, but in savanna woodland for savanna Terminalia which also had the highest biomass fraction (0.8 ± 0.1 g g−1 vs 0.6 ± 0.1 g g−1 and 0.4 ± 0.1 g g−1) and starch concentration (27% ± 10% vs 15% ± 7% and 10% ± 4%) in roots relative to savanna and forest Khaya respectively. Our results demonstrate that tree cover variation has species-specific effects on tree seedling recruitment which is related to root storage functions.

Understanding why ecological communities contain the species they do is a long-standing question in ecology. Two common mechanisms that affect the species found within communities are dispersal limitation and environmental filtering. Correctly identifying the relative influences of these mechanisms has important consequences for our understanding of community assembly. Here variable selection was used to identify the environmental variables that best predict tropical forest primate community similarity in four biogeographic regions: the Neotropics, Afrotropics, Madagascar and the island of Borneo in South-East Asia. The environmental variables included net primary productivity and altitude, as well as multiple temperature, precipitation and topsoil variables. Using the best environmental variables in each region, Mantel and partial Mantel tests were used to reanalyse data from a previously published study. The proportion of variance explained increased for each region. Despite increases, much of the variation remained unexplained for all regions (R2: Africa = 0.45, South America = 0.16, Madagascar = 0.28, Borneo = 0.10), likely due to different evolutionary and biogeographic histories within each region. Nonetheless, substantial variation among regions in the environmental variables that best predicted primate community similarity were documented. For example, none of the 14 environmental variables was included for all four regions, yet each variable was included for at least one region. Contrary to prior results, environmental filtering was an important assembly mechanism for primate communities in tropical forests worldwide. Geographic distance more strongly predicted African and South American communities whereas environmental distance more strongly predicted Malagasy and Bornean communities. These results suggest that dispersal limitation structures primate communities more strongly than environmental filtering in Africa and in South America whereas environmental filtering structures primate communities more strongly than dispersal limitation in Madagascar and Borneo. For communities defined by genera, environmental distance more strongly predicted primate communities than geographic distance in all four regions, which suggests that environmental filtering is a more influential assembly mechanism at the genus level. Therefore, a more nuanced consideration of environmental variables affects conclusions about the influences of environmental filtering and dispersal limitation on primate community structure.

Herbaceous plants are often under-studied in tropical forests, despite their high density and diversity, and little is known about the factors that influence their distribution at microscales. In a 25-ha plot in lowland Amazonian rain forest in Yasuní National Park, Ecuador, we censused six species of Heliconia (Heliconiaceae) in a stratified random manner across three topographic habitat types. We observed distribution patterns consistent with habitat filtering. Overall, more individuals occurred in the valley (N = 979) and slope (N = 847) compared with the ridge (N = 571) habitat. At the species level, Heliconia stricta (N = 1135), H. spathocircinata (N = 309) and H. ortotricha (N = 36) all had higher abundance in the valley and slope than ridge. Further, H. vellerigera (N = 20) was completely absent from the ridge. Conversely, H. velutina (N = 903) was most common in the drier ridge habitat. The two most common species (H. stricta and H. velutina) had a reciprocal or negative co-occurrence pattern and occurred preferentially in valley versus ridge habitats. These results suggest that taxa within this family have different adaptations to the wetter valley versus the drier ridge and that habitat partitioning contributes to coexistence.