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Genetic Analysis of Atypical U.S. Red Rice Phenotypes: Indications of Prior Gene Flow in Rice Fields?

Published online by Cambridge University Press:  20 January 2017

David H. Gealy ,
Hesham Agrama  and
Melissa H. Jia
David H. Gealy*
Affiliation:
Dale Bumpers National Rice Research Center, U.S. Department of Agriculture, Agricultural Research Service, 2890 Hwy. 130 E., Stuttgart, AR 72160
Hesham Agrama
Affiliation:
Rice Research and Extension Center, University of Arkansas, Division of Agriculture, 2900 Stuttgart, AR 72160
Melissa H. Jia
Affiliation:
Dale Bumpers National Rice Research Center, U.S. Department of Agriculture, Agricultural Research Service, 2890 Hwy. 130 E., Stuttgart, AR 72160
*
Corresponding author's E-mail: david.gealy@ars.usda.gov
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Abstract

Weedy red rice is a troublesome weed problem in rice fields of the southern United States. Typically, red rice plants are much taller than rice cultivars, and most biotypes are either awnless with straw-colored hulls (strawhull) or have long awns with black-colored hulls (blackhull). Outcrossing between rice and red rice occurs at low rates, resulting in a broad array of plant types. Simple sequence repeat (SSR) markers were used to evaluate the genetic backgrounds of atypical red rice types obtained from rice farms in Arkansas, Louisiana, Missouri, and Mississippi, in comparison to standard red rice types and rice cultivars. Principal coordinates analysis (PCoA) and population structure analysis of atypical red rice accessions suggested that short-stature awnless (LhtsA−) and awned (LhtsA+) types, each representing a total of about 5% of a 460-accession collection, usually were closely genetically related to their normal-sized counterparts, and not with cultivated rice. A short-awned, intermediate height type, ‘Sawn’, representing about 4% of the accessions was genetically distinct from all of the other types. Key alleles in Sawn types appeared to be shared by both standard awnless (StdRRA−) and awned (StdRRA+) red rice, suggesting that Sawn types could have arisen from gene flow between awned and awnless red rice types.

Keywords

Weedy red rice, Oryza sativa LRice, Oryza sativa LWeedy red riceOryza sativa Lstrawhull red riceblackhull red ricerice (Oryza sativa L.)rice-red rice hybridtropical japonica ricesimple sequence repeat (SSR)genetic diversity
Type
Weed Biology and Ecology
Information
Weed Science , Volume 60 , Issue 3 , September 2012 , pp. 451 - 461
Copyright
Copyright © Weed Science Society of America 

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