Tobacco germplasm are of different ‘types’, with large numbers of accessions in each type. In order to effectively manage this tobacco germplasm information, a user-friendly menu-driven software has been developed based on Visual C++ and MS-Access. The system allows the user to store, modify and update germplasm information as and when required, and represents a decision-making tool.

At 50% maturity, regenerating Senna species were characterized for morphological traits, seed reproduction, and evaluated for regeneration. Quality plants regenerated from all accessions produced 1018 to more than 21,215 total seeds. Principal component analysis revealed which traits contributed the greatest to variability among coffee senna accessions. Senna species have potential to produce pharmaceutical products and can be grown as medicinal plants. The flavonoids quercetin and kaempferol found in Senna species have been clinically shown to have anti-pancreatic cancer properties.

False brome grass, Brachypodium distachyon (L.) Beauv, has been proposed as a new model species to bridge rice and temperate cereal crops for genomics research. However, much basic information for this species is still lacking. In this study, six diploid B. distachyon (2n = 2x = 10) accessions (Bd1-1, Bd2-3, Bd3-1, Bd18-1, Bd21 and BD29) were evaluated for their response to infestation by two cereal aphid pests of common wheat (Triticum aestivum L.): the greenbug, Schizaphis graminum Rondani, and the Russian wheat aphid (RWA), Diuraphis noxia Mordvilko. Through database mining of B. distachyon expressed sequence tag (EST) and genomic DNA sequences, 160 EST- and 21 genomic microsatellite markers were developed and used to evaluate genetic diversity among the B. distachyon accessions. All six accessions were resistant to RWA biotype RWA1 but showed distinct responses to feeding by greenbug biotypes C and E, as well as RWA2 RWAs. Although microsatellite-based genetic diversity among different accessions was generally low, Bd1-1 and BD29 were the most diverged from the other four lines. The genetic divergence was correlated with geographical distances between the Brachypodium accessions. Comparison of simple sequence repeat polymorphisms in three inbred lines (Bd2-3, Bd3-1 and Bd18-1) with their respective original parental lines revealed no effect of inbreeding on genetic diversity. Phylogenetic analysis suggested that Aegilops tauschii (Coss.) Schmal., the D genome donor of common wheat, was closer to B. distachyon than to rice. The greenbug - B. distachyon system seems to be a model of choice for plant–aphid interaction studies in the grass genome.

The purpose of this study is to identify key home garden species in order to address basic research questions aimed at understanding farmers' home gardens management practices. The study was conducted in two contrasting Hill and Tarai sites in Nepal with households (HHs) ranging from 355 to 634. Unlike larger production systems, home gardens harbour many species in small areas often with a few crop varieties and species that are not well represented in larger fields. Given the number of species and their small population sizes, species and genetic diversity are best studied by identifying representative key species characterizing the complex productive niches within farms. Although species diversity within community is large (172–342), 24 key species were identified for the study. There is no fixed size of a home garden. The log of home garden size and species richness was positively correlated (r = 0.42, P < 0.001). Species richness was significantly higher in vegetable followed by fodder, fruits and spices. This paper also explores the diversity in home gardens to identify the composition and characteristics of the key species and how they are managed, used and conserved. Most of the farmers save the seeds of these home garden species for their own use, but many also exchange and buy and sell seed in local weekly market. Farmers' practices for selecting seed vary according to the reproductive biology of the key home garden species. Home gardens provide the HH with fresh and diverse supply of nutritious food, which improves their self-sufficiency, while conserving diversity on-farm. Despite this, they are neglected in research and development by policy makers and researchers.

The water lotus, genus Nelumbo, contains two species, the sacred (Nelumbo nucifera) and American lotuses (Nelumbo lutea). Hundreds of flowering lotus cultivars are currently known. However, their classification is unclear. For the classification of Nelumbo cultivars, in addition to 35 simple sequence repeat (SSR) markers recently developed, we have developed 17 and 16 of new Nelumbo SSR markers from SSR-enriched genomic libraries and expressed sequence tag (EST) data, respectively. Out of these 68 SSRs, along with SSRs recently published by others, 52 showed clear polymorphisms in 98 Nelumbo samples. A total of 300 alleles were observed, ranging from 2 to 11 alleles per locus, with an average of 5.77. Alleles specific for the American lotus-derived cultivars and a cluster of the American lotus-derived cultivars on a neighbour-joining tree confirmed genetic differences between N. lutea and N. nucifera. In addition, a possible differentiation between Chinese and Japanese cultivars was also suggested. Parentage analysis using the SSR markers confirmed four known parentages and predicted currently-unknown parentages of six cultivars. The present data have demonstrated that site-specific, co-dominant SSR markers enable more accurate classification, identification and comparison of Nelumbo species.

trans-Resveratrol (trans-3,4′,5-trihydroxystilbene), a polyphenolic compound uniquely identified in plants, is believed to greatly contribute to human health. Peanut (Arachis hypogaea L.) seeds of 20 germplasm accessions were harvested from the same field and used for resveratrol analysis by high-performance liquid chromatography. trans-Resveratrol content in air-dried peanut seeds was on average about 0.5 μg/g and a statistically significant variation (from 0.125 to 1.626 μg/g, at least a ten-fold difference) was detected among the accessions analysed. The average weight for 100 seeds was 52.84 g. A statistically significant variation in seed weight (from 22.30 to 87.94 g, at least a four-fold difference) was observed. There was no significant correlation between trans-resveratrol content and seed weight. The information about the levels of trans-resveratrol in peanut seeds will be useful for peanut cultivar development and peanut product processing. Breeders could use germplasm accessions containing a high amount of resveratrol to develop new nutritionally improved peanut cultivars and food processors could use these new cultivars to manufacture high resveratrol peanut products.

In Ethiopia, barley is used to make various types of foods, and home-made and industrial beverages. The various kinds of end-use of barley grain by rural people in two districts of West Shewa are reported. According to farmers, no other cereal crop can be processed into so many different forms of food. At least 17 kinds of foods and beverages, which are consumed in the form of whole-grain snacks, sauces, soups, drinks and baked foods, were reported. Some are mainly served on special occasions like annual ceremonies and cultural gatherings, while others are served as main dishes. Black- and purple-grained barleys are preferred for malting and home-made alcoholic drinks, whereas white-grained types are used for baking and roasting. Each landrace has its own inherent property that makes it suitable for at least one end-use. Since ancient times, barley foods are also known to farmers as remedies and traditional medicines for many kinds of diseases. The various kinds of utilizations of barley and its value in the socio-cultural lifestyles of farmers play vital roles for the on-farm maintenance of different landraces in West Shewa.

Synthetic amphiploids between Triticum aestivum (AABBDD) landrace Chinese Spring (PhI) and cultivar WL711 with different accessions of Aegilops kotschyi (UUSlSl) were developed through colchicine treatment of sterile hybrids. The F1 hybrids and amphiploid plants were intermediate between the parents for plant morphology and spike characteristics. Meiotic metaphase chromosome analysis of the F1 hybrids (ABDUSl) showed the expected chromosome number (35) and very little but variable homoeologous chromosome pairing. The amphiploids (AABBDDUUSlSl), however, had variable frequency of univalents at meiotic metaphase-I. The SDS–PAGE of high molecular weight glutenin subunits of amphiploids along with the parents showed the presence and expression of all the parental genomes in the amphiploids. The amphiploids with seeds as large as that of wheat cultivars had higher grain, flag leaf and grain ash iron and zinc concentrations than the wheat parents and comparable with those of their Ae. kotschyi parents suggest that Ae. kotschyi possesses a distinctive genetic system for the micronutrient uptake, translocation and sequestration than the wheat cultivars. This could, however, be demonstrated unequivocally only with comprehensive data on biomass, grain yield and harvest index of the Aegilops donors and the synthetic amphiploids, which is not feasible due to their shattering and hard threshing. The use of amphiploids for the transfer of high iron and zinc concentrations and development of alien addition and substitution lines in wheat is in progress.

Changes in global biodiversity at the genetic level have proved difficult to determine for most organisms because of lack of standardized, repeated or historical data; this hampers the attempts to meet the convention on biological diversity (CBD) 2010 targets of reducing loss of genetic diversity, particularly of crop species. For rice, where germplasm and genetic data have been collected throughout South and Southeast Asia over many decades, contrary to popular opinion, we have been unable to detect a significant reduction of available genetic diversity in our study material. This absence of a decline may be viewed positively; over the 33-year timescale of our study, genetic diversity amongst landraces grown in traditional agricultural systems was still sufficiently abundant to be collected for ex situ conservation. However, if significant genetic erosion does take place in the future as a result of accelerating global warming and/or major changes in land use or agricultural practices, will it be catastrophic or gradual, and how will it be detected? We have shown a strong link between numbers of landraces collected (and therefore extant) and genetic diversity; hence, we have a clear indicator to detect loss of genetic diversity in the future. Our findings lend considerable support for ex situ conservation of germplasm; the more than substantial genetic resources already in genebanks are now safe. On the other hand, it is the germplasm growing in farmers' fields, continually adapting genetically to changing environmental conditions and evolving novel genetic forms, whose future has been much less certain but can now be effectively monitored using our criteria.

Nine characters contributing to seed yield were measured on 20 accessions of horse gram (Macrotyloma uniflorum (Lam.) Verd), and subjected to genetic divergence analysis using Mahalanobis statistic and mapping using DIVA-GIS. The accessions were collected from two eco-geographical regions of Andhra Pradesh (India) – North Coastal and Rayalaseema. Based on D2 values the genotypes were grouped into five clusters. Genetic diversity was not related to eco-geographical distribution. The greatest inter-cluster distance separated clusters II and V, followed by clusters IV, and V, III and IV. Entries in clusters V and II appear suitable as parents for horse gram improvement. The Rayalaseema region is the source of useful variation for days to flowering, maturity and yield.

Higher seedling vigour and greater coleoptile length are important for early establishment of wheat crops and subsequently higher grain yield in many dry environments. Seedling vigour includes those seed properties that determine the potential for rapid, uniform emergence and development of normal seedlings under a wide range of field conditions. Genotypes with the widely used gibberellic acid (GA)-insensitive dwarfing genes Rht-B1b and Rht-D1b have good partitioning and grain yield under optimal conditions, but may perform poorly under stressed conditions due to poor crop establishment. Breeding programmes are in search of GA-sensitive dwarfing genes that do not affect seedling vigour under dry conditions. This study evaluated 40 genotypes currently used in wheat breeding programmes of south Asia for seedling vigour-related traits in greenhouse and field experiments during 2006–2007 at IAAS, Rampur, Nepal. Wide variation in coleoptile length, seedling vigour, as well as sensitivity to GA was observed. Among the genotypes studied, there were positive correlations among coleoptile length, leaf width and plant height. Genotypes, SW89-5193, SW89-5422/NL251 and SW89-5422, were found to have longer coleoptile, higher seedling vigour and response to GA application. This shows a promise for their further applications in the breeding programmes.

To assess the genetic diversity among Tunisian local barley, a set of 120 barley accessions representing five distinct geographical regions (North-West, Littoral, South, Jerba and Kerkennah Islands) was characterized with 20 simple sequence repeats (SSR) and 8 expressed sequence tag (EST)-SSR markers. The 28 loci revealed a total of 98 alleles, with an average of 3.76 alleles per locus (range 2–10). Gene diversity averaged 0.50 (range 0.09–0.84). Partitioning analysis of genetic diversity showed that about 95% of the total variation was within regions and no geographical differentiation could be found except for the North-West population. Similarly, neighbour joining clustering of the genotypes did not indicate any clear pattern of division among the barley accessions based on geographical origin. These results may reflect the impact of seed exchange between farmers which is likely to limit highlighting favourable alleles due to local adaptation.

DNA fingerprinting using microsatellites is a useful aid in cultivar identification, but has rarely been applied to garden plants. Eleven microsatellite markers were developed for the valuable garden plant Hesperanthacoccinea (Schizostylis coccinea), and used to determine relatedness of accessions. Several accessions, described as separate cultivars, appeared to have identical genotypes. Among the 53 accessions tested, there were 34 unique multilocus genotypes. The level of polymorphism detected in the cultivars was high, with on average seven alleles per locus and an average expected heterozygosity of 0.72 across loci. It is clear from the genotypes that a large proportion of the cultivars are closely related to each other. The resulting markers can now be used to generate a complete database of all known cultivars of the species and to detect essentially derived cultivars. As an extension of this study, the markers identified here could also inform us about the genetic diversity in wild populations.

We present here the first comprehensive genetic characterization of snapmelon landraces from the humid tropics of eastern India. The genetic diversity among 42 snapmelon landraces collected from four agro-ecological regions of eastern India (eight agro-ecological subregions) was assessed by measuring variation at 16 simple sequence repeat (SSR) marker loci, at various traits including plant habit and fruit type, yield (two associated traits), disease resistance and biochemical composition (total soluble solids, ascorbic acid, carotenoids and titrable acidity). Differences between accessions were observed in a number of plant and fruit traits. Snapmelon germplasm with high acidity, elevated carotenoid content and resistance to cucumber mosaic virus were identified in the collection. The SSR analysis indicated that there is a high level of genetic variability within snapmelon germplasm. Comparison of the genetic variability between snapmelons of eastern India and melons from north, south and central regions of India and reference accessions of melon from Spain, France, Japan, Korea, Maldives, Iraq, Zambia, Israel using SSRs showed that Indian snapmelon germplasm is not closely related to melon accessions from other parts of the world and that there are regional differences between Indian melon accessions. Eastern India snapmelon has unique traits, so it is important that more germplasm from this region is sampled and preserved.

Foxtail millet (Setaria italica (L.) Beauv.) is one of the ten small millets and is cultivated in 23 countries. The foxtail millet is valued as a crop of short duration, which is good as food, feed and fodder. In general, grain yield levels of foxtail millet are low in comparison with other staple cereals. The greater use of diverse germplasm in breeding is suggested as a means to improve the productivity of this crop. The International Crops Research Institute for the Semi-Arid Tropics genebank is presently holding 1474 cultivated germplasm accessions from 23 countries. To utilize this diversity in research, a core collection (10% of the entire collection) was established using the taxonomic and qualitative traits data. The germplasm accessions were stratified into three taxonomic races (Indica, Maxima and Moharia). Principal coordinate analysis was performed on 12 qualitative traits for each of the biological races, separately that resulted in the formation of 29 clusters. From each cluster, 10% of the accessions were selected to constitute a core collection of 155 accessions. The composition and diversity of the core collection was validated by the χ2-tests of the frequencies of origin, races, subraces and data on qualitative traits. The analysis of the quantitative traits for mean, range, variance, Shannon–Weaver diversity index and phenotypic associations indicated that the diversity from the entire collection was optimally represented in the core collection. The core subset will be evaluated in replicated trials to make a more precise assessment of diversity and further efforts to identify the sources of agronomic and grain nutritional traits for utilization in breeding programmes.

Many crop genetic resources collections have been established without a clearly defined conservation goal or mandate, which has resulted in collections of considerable size, unbalanced composition and high levels of duplication. Attempts to improve the composition of collections are hampered by the fact that conceptual views to optimize collection composition are very rare. An optimization strategy is proposed herein, which largely builds on the concepts of core collection and core selection. The proposed strategy relies on hierarchically structuring the crop gene pool and assigning a relative importance to each of its different components. Comparison of the resulting optimized distribution of the number of accessions with the actual distribution allows identification of under- and over-representation within a collection. Application of this strategy is illustrated by an example using potato. The proposed optimization strategy is applicable not only to individual genebanks, but also to consortia of cooperating genebanks, which makes it relevant for ongoing activities within projects that aim at sharing responsibilities among institutions on the basis of rational conservation, such as a European genebank integrated system and the global cacao genetic resources network CacaoNet.