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Development of the Northern European Ribes core collection based on a microsatellite (SSR) marker diversity analysis

  • Kristiina Antonius (a1), S. Karhu (a1), H. Kaldmäe (a2), G. Lacis (a3), R. Rugenius (a4), D. Baniulis (a4), A. Sasnauskas (a4), E. Schulte (a5), A. Kuras (a6), M. Korbin (a6), Å. Gunnarsson (a7), G. Werlemark (a7), D. Ryliskis (a8), T. Todam-Andersen (a9), L. Kokk (a10) and K. Järve (a10)...

Abstract

The purpose of the study was to support the selection process of the most valuable currant and gooseberry accessions cultivated in Northern Europe, in order to establish a decentralized core collection and, following the selection, to ensure sufficient genetic diversity in the selected collection. Molecular analyses of the material from nine project partners were run at seven different laboratories. The results were first analysed for each partner separately, and then combined to ensure sufficient genetic diversity in the core collection.

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Corresponding author

*Corresponding author. E-mail: kristiina.antonius@mtt.fi

References

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Brennan, R, Jorgensen, L, Woodhead, M and Russell, J (2002) Development and characterization of SSR markers in Ribes species. Molecular Ecology Notes 2: 327330. DOI: 10.1046/j.1471-8286.2002.00233.x.
Cryer, NC, Fenn, MGE, Turnbull, CJ and Wilkinson, MJ (2006) Allelic size standards and reference genotypes to unify international cocoa (Theobroma cacao L.) microsatellite data. Genetic Resources and Crop Evolution 53: 16431652. DOI: 10.1007/s10722-005-1286-9.
George, ML, Regalado, E, Li, W, Cao, M, Dahlan, M, Pabendon, M, Warburton, ML, Xianchun, X and Hoisington, D (2004) Molecular characterization of Asian maize inbred lines by multiple laboratories. Theoretical and Applied Genetics 109: 8091.
Karhu, S, Antonius, K, Kaldmäe, H, Pluta, S, Rumpunen, K, Ryliskis, D, Sasnauskas, A, Schulte, E, Strautina, S and Grout, B (2007) The core collection of the Northern European gene pool of Ribes created by RIBESCO project. Sodininkyste ir Darzininkyste 26: 179186.
Korpelainen, H, Kostamo, K and Virtanen, V (2007) Microsatellite marker identification using genome screening and restriction-ligation. Biotechniques 42: 479480 484–486.
Peakall, R and Smouse, P (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 6: 288295.
This, P, Jung, A, Boccacci, P, Borrego, J, Botta, R, Costantini, L, Crespan, M, Dangl, GS, Eisenheld, C, Ferreira-Monteiro, F, Grando, S, Ibáñez, J, Lacombe, T, Laucou, V, Magalhães, R, Meredith, CP, Milani, N, Peterlunger, E, Regner, F, Zulini, L and Maul, E (2004) Development of a standard set of microsatellite reference alleles for identification of grape cultivars. Theoretical and Applied Genetics 109: 14481458.

Keywords

Type Description Title
EXCEL
Supplementary materials

Antonius supplementary table 1
Antonius supplementary table 1

 Excel (107 KB)
107 KB
EXCEL
Supplementary materials

Antonius supplementary table 2
Antonius supplementary table 2

 Excel (67 KB)
67 KB
EXCEL
Supplementary materials

Antonius supplementary table 3
Antonius supplementary table 3

 Excel (71 KB)
71 KB

Development of the Northern European Ribes core collection based on a microsatellite (SSR) marker diversity analysis

  • Kristiina Antonius (a1), S. Karhu (a1), H. Kaldmäe (a2), G. Lacis (a3), R. Rugenius (a4), D. Baniulis (a4), A. Sasnauskas (a4), E. Schulte (a5), A. Kuras (a6), M. Korbin (a6), Å. Gunnarsson (a7), G. Werlemark (a7), D. Ryliskis (a8), T. Todam-Andersen (a9), L. Kokk (a10) and K. Järve (a10)...

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