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Open Access Resources for Crystallography Education in Interdisciplinary College Courses: Crystallographic Databases and 3D Printed Models

  • Peter Moeck (a1), Jennifer Stone-Sundberg (a1), Trevor J. Snyder (a1) (a2) and Werner Kaminsky (a3)

Abstract

Complementing a multitude of activities around the International Year of Crystallography, we report here on a few resources that are helpful for integrating basic crystallography into interdisciplinary college education. We concentrate on four resources with which we are directly involved. The Crystallography Open Database (COD) features currently more than 295,000 entries and has over the last decade developed into the world’s premier open-access source for the structures of small molecules and small to medium sized unit cell crystals. ‘Educational offshoots’ of the COD with approximately a thousand entries combined provide structural information on small molecules, selected macromolecules, crystal structures, grain boundaries, and crystal morphologies in the well documented Crystallographic Information Framework (CIF) file format. This information can be displayed interactively on the website http://nanocrystallography.research.pdx.edu and freely downloaded. Files that allow for the printing of selected database entries on any 3D printer have been added to this site and are also freely downloadable. These files were created with the programs Cif2VRML and WinXMorph that convert CIF files directly into 3D printing files. Interested college educators are invited to visit our open access crystallography resource portal and suggest other resources that should receive wider exposure over this portal.

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References

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3. Wai, J., Lubinski, D., and Benbow, C. P., J. Educ. Psych. 101, 817 (2009).
4. Höst, G. E., Larsson, C., Olson, A., and Tibell, L. A. E., CBE Life Sci. Educ. 12, 471 (2013).
5. Moeck, P., Stone-Sundberg, J., Snyder, T. J., and Kaminsky, W., J. Materials Education, accepted
6. Preece, D., Williams, S. B., Lam, R., and Weller, R., Anat. Sci. Educ. 6, 216 (2013).
7. Herman, T. et al. ., Biochemistry and Molecular Biology Education 34, 241 (2006).
8. http://crystallography.net mirrors in Lithuania http://cod.ibt.lt France http://cod.ensicaen.fr Spain http://qiserver.ugr.es/cod and USA http://nanocrystallography.org Gražulis, S. et al. ., Nucleic Acids Research 40, D420 (2012); http://nar.oxfordjournals.org/content/40/D1/D420.full.pdf+html / S. Gražulis et al., J. Appl. Cryst. 42, 726(2009); http://journals.iucr.org/j/issues/2009/04/00/kk5039/kk5039.pdf
9. Jones, N., Atomic Secrets - 100 years of Crystallography, Nature 505 (issue 7485), 602 (2014).
10. http://www.wwpdb.org Berman, H. M., Acta Cryst. A64, 88 (2008).
11. http://rruff.geo.arizona.edu/AMS/amcsd.php Downs, R.T. and Hall-Wallace, M. American Mineralogist 88, 247 (2003); http://nanocrystallography.net/am88_247.pdf
12. http://www.ccdc.cam.ac.uk/Community/Requestastructure/Pages/DataRequest.aspx? Groom, C. R. and Allen, F. H., Angew. Chem. Int. Ed. 52, 2 (2013).
13. http://crystdb.nims.go.jp/index_en.html Xu, Y., Yamazaki, M. and Villars, P., Jpn. J. Appl. Phys. 50, 11RH02 (2011).
16. http://www.iucr.org/resources/cif International Tables for Crystallography, Vol. G: Definition and exchange of crystallographic data, eds. Hall, S. R. and McMahon, B., both in print and on line
17. Hanson, R. M., J. Appl. Cryst. 43, 1250 (2010); http://wiki.jmol.org/index.php/Main_Page
21. Kaminsky, W., Snyder, T., Stone-Sundberg, J., and Moeck, P., Powder Diffraction, Special Issue on “Crystallographic Software”, Editor Toby, Brian H., accepted .
22. http://cad4.cpac.washington.edu/WinXMorphHome/WinXMorph.htm Kaminsky, W., J. Appl. Cryst. 38, 566 (2005) and ibidem 40, 382(2007).
23. Kitson, P. et al. . Crystal Growth & Design 14, 2720 (2014).
24. Moeck, P., Kaminsky, W., and Snyder, T. J., IUCr Newsletter 22, 7 (2014).
25. Halford, B., Chemical and Engineering News 92, 32(2014), Issue 20, May 19, 2014.
26. http://apps.lib.ua.edu/blogs/3dp-xtal/ ; set up and maintained by Vincent Scalfani.

Keywords

Open Access Resources for Crystallography Education in Interdisciplinary College Courses: Crystallographic Databases and 3D Printed Models

  • Peter Moeck (a1), Jennifer Stone-Sundberg (a1), Trevor J. Snyder (a1) (a2) and Werner Kaminsky (a3)

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