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Functional-DNA–Based Nanoscale Materials and Devices for Sensing Trace Contaminants in Water

Published online by Cambridge University Press:  31 January 2011

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Abstract

Trace contaminant detection in water represents both a grand challenge and great opportunity for materials scientists and engineers. The recent discovery that functional DNA can be obtained to bind selectively to a wide range of contaminants makes it possible to interface these molecules with nanoscale materials, such as gold nanoparticles and quantum dots, to transform the molecular reorganization between functional DNA and contaminants into physically detectable colorimetric and fluorescent signals. Micro- and nanofluidic devices have also played a critical role in lowering the detection limits of functional-DNA sensors, promoting sensor regeneration and thus improving sensor performance and allowing long-term unattended monitoring of water quality.

Type
Research Article
Copyright
Copyright © Materials Research Society 2008

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References

1.Tuerk, C., Gold, L., Science 249, 505 (1990).CrossRefGoogle Scholar
2.Ellington, A.D., Szostak, J.W., Nature 346, 818 (1990).CrossRefGoogle Scholar
3.Wilson, D.S., Szostak, J.W., Annu. Rev. Biochem. 68, 611 (1999).CrossRefGoogle Scholar
4.Jayasena, S.D., Clin. Chem. 45, 1628 (1999).CrossRefGoogle Scholar
5.Shangguan, D., Li, Y., Tang, Z., Cao, Z.C., Chen, H.W., Mallikaratchy, P., Sefah, K., Yang, C.J., Tan, W., Proc. Natl. Acad. Sci. U.S.A. 103, 11838 (2006).CrossRefGoogle Scholar
6.Breaker, R.R., Curr. Opin. Biotechnol. 13, 31 (2002).CrossRefGoogle Scholar
7.Hesselberth, J., Robertson, M.P., Jhaveri, S., Ellington, A.D., Rev. Mol. Biotechnol. 74, 15 (2000).CrossRefGoogle Scholar
8.Famulok, M., Szostak, J.W., Angew. Chem. 104, 1001 (1992).CrossRefGoogle Scholar
9.Bartel, D.P., Szostak, J.W., Science 261, 1411 (1993).CrossRefGoogle Scholar
10.Breaker, R.R., Chem. Rev. 97, 371 (1997).CrossRefGoogle Scholar
11.Carmi, N., Shultz, L.A., Breaker, R.R., Chem. Biol. 3, 1039 (1996).CrossRefGoogle Scholar
12.Bashkin, J.K., Curr. Biol. 7, R286 (1997).CrossRefGoogle Scholar
13.Carola, C., Eckstein, F., Curr. Opin. Chem. Biol. 3, 274 (1999).CrossRefGoogle Scholar
14.Conrad, R.C., Giver, L., Tian, Y., Ellington, A.D., Meth. Enzymol. 267, 336 (1996).CrossRefGoogle Scholar
15.Conrad, R.C., Bruck, F.M., Bell, S., Ellington, A.D., in RNA: Protein Interactions: A Practical Approach, Smith, C.W. J., Ed. (Oxford University Press, New York, 1998) pp. 285325.CrossRefGoogle Scholar
16.Klug, S.J., Famulok, M., Mol. Biol. Rep. 20, 97 (1994).CrossRefGoogle Scholar
17.Kurz, M., Breaker, R.R., Curr. Top. Microbiol. Immunol. 243, 137 (1999).Google Scholar
18.Nieuwlandt, D., Curr. Innovations Mol. Biol. 5, 117 (1998).Google Scholar
19.Lu, Y., Liu, J., Acc. Chem. Res. 40, 315 (2007).CrossRefGoogle Scholar
20.Lu, Y., Liu, J., Curr. Opin. Biotechnol. 17, 580 (2006).CrossRefGoogle Scholar
21.Li, J., Lu, Y., J. Am. Chem. Soc. 122, 10466 (2000).CrossRefGoogle Scholar
22.Li, J., Zheng, W., Kwon, A.H., Lu, Y., Nucleic Acids Res. 28, 481 (2000).CrossRefGoogle Scholar
23.Liu, J., Lu, Y., Anal. Chem. 75, 6666 (2003).CrossRefGoogle Scholar
24.Liu, J., Brown, A.K., Meng, X., Cropek, D.M., Istok, J.D., Watson, D.B., Lu, Y., Proc. Natl. Acad. Sci. U.S.A. 104, 2056 (2007).CrossRefGoogle Scholar
25.Liu, J., Lu, Y., J. Am. Chem. Soc. 129, 9838 (2007).CrossRefGoogle Scholar
26.Liu, J., Lu, Y., Angew. Chem., Int. Ed. 46, 7587 (2007).CrossRefGoogle Scholar
27.Chiuman, W., Li, Y., Nucleic Acids Res. 35, 401 (2007).CrossRefGoogle Scholar
28.Mei, S.H.J., Liu, Z., Brennan, J.D., Li, Y., J. Am. Chem. Soc. 125, 412 (2003).CrossRefGoogle Scholar
29.Liu, Z., Mei, S.H.J., Brennan, J.D., Li, Y., J. Am. Chem. Soc. 125, 7539 (2003).CrossRefGoogle Scholar
30.Shen, Y., Mackey, G., Rupcich, N., Gloster, D., Chiuman, W., Li, Y., Brennan, J.D., Anal. Chem. 79, 3494 (2007).CrossRefGoogle Scholar
31.Nutiu, R., Li, Y., Methods 37, 16 (2005).CrossRefGoogle Scholar
32.Nutiu, R., Li, Y., Angew. Chem., Int. Ed. 44, 1061 (2005).CrossRefGoogle Scholar
33.Nutiu, R., Li, Y., Chem. Eur. J 10, 1868 (2004).CrossRefGoogle Scholar
34.Nutiu, R., Li, Y., J. Am. Chem. Soc. 125, 4771 (2003).CrossRefGoogle Scholar
35.Swearingen, C.B., Wernette, D.P., Cropek, D.M., Lu, Y., Sweedler, J.V., Bohn, P.W., Anal. Chem. 77, 442 (2005).CrossRefGoogle Scholar
36.Wernette, D.P., Swearingen, C.B., Cropek, D.M., Lu, Y., Sweedler, J.V., Bohn, P.W., Analyst 131, 41 (2006).CrossRefGoogle Scholar
37.Wernette, D.P., Mead, C., Bohn, P.W., Lu, Y., Langmuir 23, 9513 (2007).CrossRefGoogle Scholar
38.Kuo, T.C., Cannon, D.M., Shannon, M.A., Bohn, P.W., Sweedler, J.V., Sens. Actuators A 102, 223 (2003).CrossRefGoogle Scholar
39.Kuo, T.C., Cannon, D.M., Chen, Y.N., Tulock, J.J., Shannon, M.A., Sweedler, J.V., Bohn, P.W., Anal. Chem. 75, 1861 (2003).CrossRefGoogle Scholar
40.Chang, I.-H., Tulock, J.J., Liu, J., Kim, W.-S., Cannon, D.M. Jr, Lu, Y., Bohn, P.W., Sweedler, J.V., Cropek, D.M., Environ. Sci. Technol. 39, 3756 (2005).CrossRefGoogle Scholar
41.Shaikh, K.A., Ryu, K.S., Goluch, E.D., Nam, J.-M., Liu, J., Thaxton, C.S., Chiesl, T.N., Barron, A.E., Lu, Y., Mirkin, C.A., Liu, C., Proc. Natl. Acad. Sci. U.S.A. 102, 9745 (2005).CrossRefGoogle Scholar
42.Yguerabide, J., Yguerabide, E.E., Anal. Biochem. 262, 137 (1998).CrossRefGoogle Scholar
43.Jin, R., Wu, G., Li, Z., Mirkin, C.A., Schatz, G.C., J. Am. Chem. Soc. 125, 1643 (2003).CrossRefGoogle Scholar
44.Mirkin, C.A., Letsinger, R.L., Mucic, R.C., Storhoff, J.J., Nature 382, 607 (1996).CrossRefGoogle Scholar
45.Elghanian, R., Storhoff, J.J., Mucic, R.C., Letsinger, R.L., Mirkin, C.A., Science 277, 1078 (1997).CrossRefGoogle Scholar
46.Liu, J., Lu, Y., J. Am. Chem. Soc. 125, 6642 (2003).CrossRefGoogle Scholar
47.Liu, J., Lu, Y., J. Am. Chem. Soc. 126, 12298 (2004).CrossRefGoogle Scholar
48.Liu, J., Lu, Y., J. Am. Chem. Soc. 127, 12677 (2005).CrossRefGoogle Scholar
49.Liu, J., Lu, Y., Org. Biomol. Chem. 4, 3435 (2006).CrossRefGoogle Scholar
50.Liu, J., Lu, Y., Angew. Chem., Int. Ed. 45, 90 (2006).CrossRefGoogle Scholar
51.Liu, J., Lu, Y., Nature Protocols 1, 246 (2006).CrossRefGoogle Scholar
52.Liu, J., Lu, Y., Adv. Mater. 18, 1667 (2006).CrossRefGoogle Scholar
53.Huizenga, D.E., Szostak, J.W., Biochemistry 34, 656 (1995).CrossRefGoogle Scholar
54.Wang, D.Y., Lai, B.H.Y., Sen, D., J. Mol. Biol. 318, 33 (2002).CrossRefGoogle Scholar
55.Liu, J., Lu, Y., Anal. Chem. 76, 1627 (2004).CrossRefGoogle Scholar
56.Li, H., Rothberg, L.J., J. Am. Chem. Soc. 126, 10958 (2004).CrossRefGoogle Scholar
57.Wang, L., Liu, X., Hu, X., Song, S., Fan, C., Chem. Commun., 3780 (2006).CrossRefGoogle Scholar
58.Wei, H., Li, B., Li, J., Wang, E., Dong, S., Chem. Commun., 3735 (2007).CrossRefGoogle Scholar
59.Zhao, W., Chiuman, W., Brook, M.A., Li, Y., ChemBioChem 8, 727 (2007).CrossRefGoogle Scholar
60.Liu, J., Lee, J.H., Lu, Y., Anal. Chem. 79, 4120 (2007).CrossRefGoogle Scholar
61.Mitchell, G.P., Mirkin, C.A., Letsinger, R.L., J. Am. Chem. Soc. 121, 8122 (1999).CrossRefGoogle Scholar
62.Gueroui, Z., Libchaber, A., Phys. Rev. Lett. 93, 166108/1 (2004).CrossRefGoogle Scholar
63.Wargnier, R., Baranov, A.V., Maslov, V.G., Stsiapura, V., Artemyev, M., Pluot, M., Sukhanova, A., Nabiev, I., Nano Lett. 4, 451 (2004).CrossRefGoogle Scholar
64.Oh, E., Hong, M.-Y., Lee, D., Nam, S.-H., Yoon, H.C., Kim, H.-S., J. Am. Chem. Soc. 127, 3270 (2005).CrossRefGoogle Scholar
65.Dyadyusha, L., Yin, H., Jaiswal, S., Brown, T., Baumberg, J.J., Booy, F.P., Melvin, T., Chem. Commun., 3201 (2005).CrossRefGoogle Scholar
66.Glynou, K., Ioannou, P.C., Christopoulos, T.K., Syriopoulou, V., Anal. Chem. 75, 4155 (2003).CrossRefGoogle Scholar
67.Famulok, M., Mayer, G., Nature 439, 666 (2006).CrossRefGoogle Scholar
68.Liu, J., Mazumdar, D., Lu, Y., Angew. Chem., Int. Ed. 45, 7955 (2006).CrossRefGoogle Scholar