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rAMI – Rapid Alignment with Moment of Inertia for Cryo-EM Image Processing

Published online by Cambridge University Press:  30 July 2021

Szu-Chi Chung
Affiliation:
Institute of Statistical Science, Academia Sinica, United States
Shao-Hsuan Wang
Affiliation:
Institute of Statistics, National Central University, United States
Cheng-Yu Hung
Affiliation:
Institute of Statistical Science, Academia Sinica, United States
Wei-Hau Chang
Affiliation:
Institute of Chemistry, Academia Sinica, United States
I-Ping Tu
Affiliation:
Institute of Statistical Science, Academia Sinica, United States

Abstract

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Type
Cryo-electron Tomography: Present Capabilities and Future Potential
Copyright
Copyright © The Author(s), 2021. Published by Cambridge University Press on behalf of the Microscopy Society of America

References

Wrapp, Daniel, et al. “Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation.” Science 367.6483 (2020): 1260-1263.CrossRefGoogle ScholarPubMed
Kimanius, Dari, Forsberg, Bjrn O., Scheres, Sjors H.W., and Lindahl, Erik. “Accelerated cryo-EM structure determination with parallelisation using GPUS in RELION-2”. eLife, (2016). 3.Google ScholarPubMed
Zivanov, Jasenko, et al. “New tools for automated high-resolution cryo-EM structure determination in RELION-3.” elife 7 (2018): e42166.CrossRefGoogle ScholarPubMed
Punjani, Ali, Rubinstein, John L., Fleet, David J., and Brubaker, Marcus A.. “CryoSPARC: Algorithms for rapid unsupervised cryo-EM structure determination”. Nature Methods, (2017). 2, 3.Google Scholar
Flusser, Jan, Suk, Tomas, and Zitová, Barbara. “2D and 3D image analysis by moments”. John Wiley & Sons, (2016).CrossRefGoogle Scholar
Chung, S.C., Wang, S.H., Niu, P.Y., Huang, S.Y., Chang, W.H., and Tu, I.P., “Two-stage dimension reduction for noisy high-dimensional images and application to cryo-em,” Annals of Mathematical Sciences and Applications, vol. 5, no. 2, pp. 283316, (2020).Google Scholar
Penczek, P., Radermacher, M. & Frank, J. “Three-dimensional reconstruction of single particles embedded in ice”. Ultramicroscopy 40, 3353 (1992).CrossRefGoogle ScholarPubMed
Tang, Guang, Peng, Liwei, Baldwin, Philip R, Mann, Deepinder S, Jiang, Wen, Rees, Ian, and Ludtke, Steven J, “Eman2: an extensible image processing suite for electron microscopy,” Journal of Structural Biology, vol. 157, no. 1, pp. 3846, (2007).Google ScholarPubMed
Herman, Gabor T., and Kalinowski, Miroslaw. “Classification of heterogeneous electron microscopic projections into homogeneous subsets.” Ultramicroscopy 108.4, 327-338 (2008).CrossRefGoogle ScholarPubMed
Wong, W. et al. Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the antiprotozoan drug emetine. Elife 3, e03080 (2014).Google Scholar