Earthworm assemblages are usually spatio-temporally structured in mosaics of patches with different species composition. We re-analysed results of past research carried out in Eastern Colombia to explore how interspecific competition accounts for this pattern. In three sown pastures and three native savannas, density data matrices were obtained from spatially explicit samplings at several successive dates, and spatio-temporal patterns of species assemblages were described through partial triadic analyses and geostatistics. This first analysis detected assemblage patchiness in the six plots at spatial scales ranging from 6 to 33 m. Species richness ranged from 5 to 6 species per plot. Null models were further used to analyse niche overlap and morphometric distribution patterns at two different scales, i.e. at the ‘plot level’ and the ‘patch level’. Seasonal and vertical niche overlaps were higher than expected by chance at both scales, indicating high environmental constraints on assemblage membership. Within-patch overlaps were lower than plot-scale overlaps. Biometric niche overlap was random at the plot level and was weakly lower than that expected by chance in patches. Body weight was significantly overdispersed and constant whatever the scale, while body length and diameter showed a similar trend within patches. These results suggest that earthworms form distinct assemblages within patches, mainly driven by deterministic responses to competition: ecologically similar species avoid competition through spatial segregation, whereas a minimal level of ecological segregation is required to allow co-existence in a given patch.

Transformation of tropical forests is likely to affect seed-dispersal patterns and influence the composition of epiphytic plant communities in human-altered habitats. We tested this hypothesis by carrying out a comparative study of seed influx, survival and growth of transplanted seedlings of epiphytic bromeliads among isolated trees in six pasture areas, six forest edges and six forest sites in a montane area in Costa Rica. In total, 72 traps trapped 1285 seeds over a 2-mo period in the dry season of 2003. For all four investigated bromeliad genera, Catopsis, Guzmania, Tillandsia and Werauhia, the number of trapped seeds in each habitat followed a pattern similar to the number of fruiting individuals in the vicinity of the traps. Traps in forest edges (30) were 1.9 times more likely to collect seeds than traps at forest interiors (30) and pasture trees (12), the latter showing similar probabilities of catching seeds. After 1 y, survival and growth of 3660 transplanted seedlings from three bromeliad species was significantly higher in forest interiors, providing no explanation for the lower abundance of fruiting adults in that habitat. These results suggest that the successful establishment of epiphytic bromeliads in forest interiors is mainly dispersal-limited. If corroborated, differences in abundance among species at each habitat are likely related to differences in growth rates and reproductive success. Further studies on the growth and mortality of seedlings up to the flowering stage, however, are needed.

Understanding how wood decomposition varies spatially at the mesoscale (between 1-ha plots) may improve carbon flux estimates in Amazonian forests. An experiment was carried out to test the influence of soil, slope, above-ground tree live biomass (biomass), fine-litter mass and characteristics of neighbouring trees on the variation of wood decomposition between 1-ha plots in four species of tropical trees that vary in wood density (Manilkara huberi – 0.86 g cm−3, Couratari guianensis – 0.54 g cm−3, Hura crepitans – 0.32 g cm−3 and Parkia pendula – 0.29 g cm−3). A wood sample from each species (30 × 5 × 2.5 cm) was placed in each of 71 plots within 64 km2 of terra firme tropical moist forest in Reserva Florestal Adolpho Ducke. One year later, samples were collected and weighed. The effects of specificity of decomposers was measured by the association of decomposition with the wood density and with the taxonomic group of the nearest tree with dbh ≥30 cm. Wood decomposition was independent of soil (texture and nutrients), slope, biomass and fine-litter mass at the mesoscale, except for C. guianensis, which showed greater decomposition in locations with greater biomass. Decomposition was also independent of wood density and taxonomic group of nearby large trees. In general, none of the variables was useful as a predictor of wood decomposition at the scale larger than 1 ha. Thus, the use of models that include soil and topography to improve estimates of carbon flux are limited because wood decomposition does not follow similar mesoscale patterns to that of biomass and fine-litter decomposition. Also, the results indicate that wood decomposition is more likely to be associated with generalist decomposers than with specialists associated with neighbouring trees.

Vascular epiphytes can be quite abundant in vegetation close to the ocean surf, where they are exposed to a more or less continuous input of salt spray. The ecophysiological basis of their occurrence, i.e. salt tolerance or avoidance, is unresolved, because all previous studies were observational and conclusions thus circumstantial. Here, the effect of varying concentrations of salt water on germination, and growth and survival of seedlings and established plants was investigated in a growth cabinet study under controlled conditions. Seeds (1500), seedlings (750) and small tank plants (336) were from four populations of Werauhia sanguinolenta that were growing either close to the sea or inland in Panama. Changes of Na+ and K+ concentrations in plant tissue were also determined. No differences in the sensitivity to salt were found among populations, nor among life stages. External concentrations (Cext) of up to 15% sea water (c. 0.5% Na+) allowed complete germination as well as positive growth and survival in both seedlings and established plants over short periods (8–10 wk). After longer exposure (12 wk) of established plants visible damage and increased mortality were observed at lower Cext, but critical tissue Na+ levels were similar: c. 50 mg gDW−1. It is concluded that this common epiphyte does not meet the definition of a halophyte, but still possesses a rather high tolerance to sodium.

Fallen tree trunks (‘nurse logs’) are important recruitment sites for trees in temperate forest, however nurse log use is seldom reported in tropical forests. We predicted that logs should be important for the regeneration of small-seeded tropical pioneer species because surface leaf litter and competition with established vegetation reduces the establishment success of these species from soil seed banks. In a survey on Barro Colorado Island, Panama, we found that pioneer seedlings were present on logs in 40 of 95 recent treefall gaps. In gaps where seedlings were present on logs, seedling density was not significantly different from adjacent areas of soil. However, species composition was significantly different; logs were disproportionately colonized by smaller-seeded and wind-dispersed species. In growing-house experiments using 12 species, we found that wood substrate had little effect on seed germination. In contrast, seedling growth was 50% lower on decayed wood than soil. Furthermore, species growth rates on wood were not significantly correlated with growth rates in soil (df = 10, r = 0.48). If establishment on logs eventually leads to recruitment to the forest canopy, then logs may promote the maintenance of diversity by favouring a different group of species from those that recruit in soil.

Terrestrial insectivorous birds in a cloud-forest on the north-western slope of the Peruvian Andes were described in terms of species richness, abundance, density, territory size and biomass. Abundance, density and territory size were also characterized for several understorey insectivores. The three terrestrial insectivore species, all in the genus Grallaria, had 35.25 territories on a 26.2-ha plot, defended territories of (mean ± SD) 1.65 ± 1.34 ha, dwelled at an average density of 4.4 ± 2.7 pairs per 10 ha per species and constituted a biomass of 2470 g per 10 ha. Eight understorey insectivore species had 122.75 territories on the plot, held territories 0.86 ± 0.62 ha in size, and lived at an average density of 5.0 ± 2.7 pairs per 10 ha per species. Six of the 11 species studied each occupied over 50% of the plot. Data on terrestrial insectivores from this study were compared with data from other Neotropical plots to examine how properties of guild structure relate to one another. Increasing densities, smaller territory sizes and higher biomasses appeared to be linked with decreasing species richness and increasing elevation, suggesting consistent patterns of covariance.

The breeding system of Laguncularia racemosa is variable among populations; some populations are androdioecious while other populations lack male plants. To determine whether androdioecy is widespread in L. racemosa, 65 populations were surveyed in Florida and the Bahamas. Fruits are water-dispersed, so the observed distribution of breeding systems was compared to local and regional water currents in order to determine whether dispersal could be important to the maintenance of male plants in androdioecious populations. Twenty-two of the 36 populations surveyed in Florida were androdioecious, with male frequencies that ranged from 1–68%. On the Florida east coast, all populations north of latitude 26°30′ N lacked males while all populations south of this latitude were androdioecious, which suggests that northern populations may lack males due to dispersal limitation. The pattern of distribution on the Florida west coast suggests that males may be maintained in some populations via dispersal. Nine islands in north-central Bahamas were surveyed, and androdioecious populations were found only on San Salvador Island, where male frequencies ranged from 5–28%. Dispersal, fragmentation, and selection hypotheses are suggested to explain the observed pattern of distribution; these hypotheses will be tested in future studies.

Immediately after their transition from aquatic to terrestrial life, juveniles of many anuran species are restricted to the margins of natal ponds. Understanding the factors determining the duration of that pondside aggregation has direct management ramifications in the case of the invasive cane toad (Bufo marinus) in tropical Australia. Previous work suggests that dispersal confers biotic advantages (reduced risk of cannibalism, enhanced feeding opportunities) to juvenile toads, but desiccation risk constrains these small animals to the moist margins of the pond. If so, juvenile dispersal should be sensitive to fluctuating hydric conditions on a diel and seasonal cycle. We tested this prediction with field observations (monitoring of dispersal to and from the pond) and field experiments (manipulating hydric regimes). Our results support a dynamic model of juvenile distribution, with a primary role for temporal variations in desiccation risk as the primary factor driving dispersal. During the dry season, strong diel cycles in desiccation risk generate a ‘tidal’ flow of juveniles, dispersing out in the moist morning but retreating to the pond margins at midday. Dispersal rates were enhanced by artificial watering during the dry season, and by the onset of the wet season.

The floral biology and pollination ecology of durian, Durio zibethinus, were determined in eight semi-wild trees in mixed-fruit orchards in southern Thailand during April-May 2003 and 2005. Flowers open fully at 16h00–16h30 and most androecia drop around 01h00. Anthers dehisce at 19h30–20h00 when the stigmata are already receptive. In a series of pollination experiments, fruit was set in all treatments within 10 d. The greatest pollination success occurred after hand-crossed (76.6%), open (54.4%) and emasculation pollination (53.3%). Consistently, hand-crossed (12.2%), emasculation (8.7%) and open pollination (5.1%) yielded a substantial fruit set 2 mo after the pollination experiments. Very low pollination success in facilitated autogamy suggests that most durian trees are highly self incompatible. No mature fruit was found after insect pollination and automatic autogamy. Fruit bats, especially Eonycteris spelaea, are the major pollinators of this durian although the giant honey bee (Apis dorsata) was the most frequent visitor to the flowers. Bats visited durian flowers at the rate of 26.1 (SD = 20.7) visits per inflorescence per night. Since this semi-wild durian depends on fruit bats as its pollinator, protecting fruit bat populations and their roosts is vital for the production of the durian fruit crop.

Litter decomposition is a fundamental process for nutrient cycling but we have a limited understanding of this process in disturbed tropical forests. We studied litter decomposition over a 10-mo period in a seasonally dry Amazon forest in Mato Grosso, Brazil. The study plots (50 ha each) included unburned forest (UF), once-burned (BF1) and forest burned annually for 3 y (BF3). We measured understorey density, litter depth, canopy openness, temperature and relative humidity in the plots. Decomposition experiments took place using 720 litterbags filled with approximately 10 g of natural abscised oven-dried leaves. To test the effects of fire on soil meso- and macrofauna, the litterbags had either a fine (2 mm) or coarse (with 1-cm holes in side) mesh size. Litterbags were collected and reweighed 2, 4, 6 and 8 mo after being placed on the forest floor. All forest structure variables were significantly different across plots: BF3 was hotter, less humid, had the highest degree of canopy openness, lowest understorey density and the shallowest litter depth. Litter decomposition (mass loss) was similar in the once-burned and unburned plots, but declined more slowly in BF3. In addition, decomposition was slower in fine-mesh litterbags than coarse-mesh litterbags in BF3, but there was no difference between mesh sizes in BF1 and UF. It is likely that changes in forest structure and microclimate explain the lower decomposition rates in BF3. These results show the importance of recurrent fires, but suggest that single understorey fires may not have long-term negative effects on some ecological processes in seasonally dry Amazonian forests.

Quantitative analyses of the factors driving the distribution of bryophytes in the phyllosphere of tropical rain forests are rare. In this study we sampled epiphyllous bryophytes on two leaves of each of 57 individuals belonging to four phorophyte species (Asplundia pittieri, Carludovica drudei, Costus laevis and Dieffenbachia concinna) at three adjacent, but microclimatically varied sites in the Esquinas forest, Costa Rica. Microclimatic parameters and phorophyte identities were correlated to differences in cover, diversity and species composition of bryophyte assemblages by means of Kruskal–Wallis tests, non-metric multidimensional scaling and indicator species analysis. High relative humidity and in particular daily fluctuations in relative humidity proved to be the most important factors for epiphyll distribution suggesting severe constraints of epiphyll colonisation by pronounced humidity fluctuations. Differences in air temperature and light availability as well as phorophyte identity were only weakly correlated with bryophyte cover and diversity. However, species composition of epiphyllous assemblages was related to all microclimatic variables as well as to phorophyte identity. The strong response of epiphyllous bryophytes to even subtle microclimatic variations suggests that undisturbed forest canopies and their control on microclimate may be essential for the development of epiphyll communities.

Habitat fragmentation and deforestation are thought to disrupt host–parasite interactions and increase the risk of epizootic outbreaks in wild vertebrates. A total of 220 individuals from three species of African rain-forest bird (Andropadus latirostris, Andropadus virens, Cyanomitra obscura), captured in two pristine and two agroforests in Cameroon, were screened for the presence of avian haemosporidian parasites (species of Plasmodium and Haemoproteus) to test whether habitat differences were associated with differences in the prevalence of infectious diseases in natural populations. Thirteen mitochondrial lineages, including 11 Plasmodium and two Haemoproteus lineages were identified. Whereas levels of Haemoproteus spp. infections were too low to permit analysis, the prevalence of infections with Plasmodium spp. reached significantly greater levels in undisturbed mature forests. Importantly however, the significant association between forest type and parasite prevalence was independent of host density effects, suggesting that the association did not reflect changes in host species composition and abundance between forest types. Our results illustrate how characterizing land-cover differences, and hence changes, may be a prerequisite to understanding and predicting patterns of parasite infections in natural populations of rain-forest birds.

In tropical forests, most individual fruit-bearing trees depend on frugivores for seed dispersal (Howe & Smallwood 1982, Wilson 1992). Seed dispersal enhances germination potential, provides an opportunity for seeds to escape predation under the parent plants, and reduces seedling numbers under parent trees (Şekercioğlu et al. 2004). The way frugivores handle seeds and process them may influence the seed fate of many plants (Janzen 1971). The quantity of seeds dispersed and the quality of dispersal provided by frugivores impact plant fitness (Herrera & Jordano 1981). Schupp (1993) defined the effectiveness of seed dispersal by frugivores as an empirical measure of quantity of seeds dispersed and quality of dispersal from the parent plant to a suitable microsite. Seed dispersal by frugivores increases the chances for seedling survival away from the vicinity of the parent plant because in tropical forests seed predation is concentrated under adult trees that prevent seedlings from establishing near parent trees (Howe & Miriti 2004).

Spatial and seasonal variation in soil respiration rates were investigated in a tropical dry forest in Thailand. The spatial variation was examined at 50 points within a 2-ha plot in the forest floor during the dry and wet seasons. The seasonal and diurnal variations in soil respiration were measured at 16 and 5 points, respectively. The mean soil respiration rate during the wet season was 1041 ± 542 mg CO2 m−2 h−1 (mean ± SD), which is about twice that during the dry season. Soil respiration rate was negatively correlated with soil water content during the wet season. A polynomial equation using seasonal data describes soil respiration and water content: soil respiration rate increased with soil water content, but started to drop when soil water content exceeded 21%. The diurnal variation in soil respiration rate during the wet season was positively correlated with soil temperature, whereas during the wet season it was not correlated with soil temperature. The diurnal variation in soil respiration rate during the dry season showed a midday depression. The estimation of soil carbon flux with polynomial equations should incorporate different functions for the wet and dry seasons in tropical dry forests.

Seeds dispersed and deposited by wind, animals and other dispersal agents are a fundamental component of natural forest succession, plant regeneration and population maintenance, aside from increasing a population's genetic pool in tropical ecosystems (Henry & Jouard 2007, Muscarella & Fleming 2007, Wilson & Traveset 2000). Frugivorous bats and birds are ideal vectors for long-distance seed dispersal; therefore, studies of the food habits of frugivores and the specific identities of the dispersers are essential for understanding ecological patterns and processes in tropical environments. Studies related to succession processes, the frequency, number and composition of seeds dispersed by animals are essential in order to generate new data and hypotheses, consequently the method and quality of obtaining data are important.

Many species of termite (Isoptera) build their nests inside mounds because a mound has direct and positive feedback effects on the termite colonies through the maintenance of humidity and protection of the population from enemies, e.g. ants (Jouquet et al. 2006, Korb 2003, Noirot & Darlington 2000). Soil manipulation by termites (Isoptera) for mound construction is of particular interest for many researchers in terms of pedogenesis of the tropics (Lavelle et al. 1992, Lobry de Bruyn & Conacher 1990). The termites select soil particles according to ecological requirements such as water availability (Jouquet et al. 2002, 2007) and improve soil structural stability by means of application of clay particles and saliva/excreta (Fall et al. 2001, Jouquet et al. 2004). The nest-building activity of the termites inevitably causes regional translocation of soils (Bagine 1984, Holt & Lepage 2000) and distinctive patches in local ecosystems, which contributes to ecological diversity (Lavelle et al. 1992). This is the reason why termites are regarded as an ecological engineer (Jouquet et al. 2006). Soil-particle selection by the termites, however, has not been fully explored in relation to diverse ecologies and landscapes in Africa.

Litter standing crop (LSC) is the quantity of plant detritus on the floor in forested environments. Knowledge of LSC is important in understanding many ecological phenomena. These include studies of litterfall, decomposition/litter turnover rates and nutrient cycling (Anderson et al. 1983, Dent et al. 2006), general plant performance (Benítez-Malvido & Kossmann-Ferraz 1999), other ecosystem processes such as the effects of fire (Odiwe & Muoghalu 2003) and fauna (Frith & Frith 1990, Giaretta et al. 1999, Levings & Windsor 1985). The determination of accurate annual average LSC data, may require monitoring over long periods due to seasonality and sometimes sporadic nature of litterfall and decomposition rates (Clark et al. 2001). Furthermore, the effects of topography and water movement create the need for both representative site selection and sufficient spatial coverage.

The nurse effect is a positive interaction in which one plant (the nurse) provides conditions that enhance the establishment and growth of another plant species (Callaway 1995). Increased environmental severity appeared to increase the strength of nurse effects (Brooker et al. 2008, Lortie & Callaway 2006). On the one hand, the impact of the nurse effect depends on the magnitude of the environmental changes exerted by the nurse plant. On the other hand, the impact could depend on the number of plant species in the regional pool that respond to such changes. For example, better conditions beneath the crowns of nurse plants might allow the occurrence of species that are sensitive to environmental stress and that occur infrequently in open areas. Thus, if a nurse plant modulates environmental conditions that are critical for the persistence of other plant species, it seems likely that such nurse plants would have greater effects in stressful habitats, where they cause relatively larger environmental mitigation (Badano et al. 2006, Callaway et al. 2002).

Seed dispersal into fragmented tropical landscapes limits the rate and character of ecological succession between forest remnants. In a novel experiment in recovery of dispersal between forest remnants, 120 1-m2 seed traps were placed in fenced plots in active pasture 90–250 m from forest, and in nearby primary and secondary forests. Total seed rain from December 2006 to January 2008 included 69 135 seeds of 57 woody species. High richness of seed rain of early-successional trees occurred in all habitats, but seed rain of late-successional woody plants was much lower into pastures and secondary forest than into old-growth forest. Non-metric ordination analysis further demonstrated high movement of late-successional species within and between forest and secondary forest, but little movement of species of either forest type to pastures. Most species were dispersed by animals, but most seeds were dispersed by wind. A pattern of seed rain biased strongly towards wind-dispersed species creates a template for regeneration quite unlike that in nearby forest.

Bat-pollinated (chiropterophilous) flowers are characterized by a wide-throated corolla, foetid odour, production of a copious amount of pollen and nectar, and most importantly nocturnal blooming (Faegri & van der Pijl 1979). In India, out of the 28 chiropterophilous plants reported (Subramanya & Radhamani 1993) only Ceiba pentandra (Bombacaceae) has been investigated in some detail (Nathan et al. 2005).