Anderson, M.J. (2001) A new method for non-parametric multivariate analysis of variance. Austral Ecology 26, 32–46.
Box, G.E.P. and Cox, D.R. (1964) An analysis of transformations. Journal of the Royal Statistical Society, Series B 26, 211–252.
Bray, J.R. and Curtis, J.T. (1957) An ordination of the upland forest communities of Southern Wisconsin. Ecological Monographs 27, 325–349.
Brearley, A. (2005) Ernest Hodgkin's Swanland. Perth: University of Western Australia Press.
Buckley, B.W., Sullivan, W., Chan, P. and Leplastrier, M. (2010) Two record breaking Australian hail storms: storm environments, damage characteristics and rarity. In 25th Conference on Severe Local Storms. 11–14 October 2010 Denver: American Meteorological Society. Available at: https://ams.confex.com/ams/pdfpapers/175723.pdf (accessed 16 August 2013).
Chatfield, C. and Collins, A.J. (1980) Introduction to multivariate analysis. London: Chapman & Hall.
Clarke, K.R. (1993) Non-parametric multivariate analyses of changes in community structure. Australian Journal of Ecology 18, 117–143.
Clarke, K.R. and Ainsworth, M. (1993) A method of linking multivariate community structure to environmental variables. Marine Ecology Progress Series 92, 205–219.
Clarke, K.R. and Gorley, R.N. (2006) PRIMER v.6: user manual/tutorial. Plymouth: PRIMER-E.
Clarke, K.R. and Green, R.H. (1988) Statistical design and analysis for a ‘biological effects' study. Marine Ecology Progress Series 46, 213–226.
Clarke, K.R. and Warwick, R.M. (1998) Quantifying structural redundancy in ecological communities. Oecologia 113, 278–289.
Clarke, K.R. and Warwick, R.M. (2001) Change in marine communities: an approach to statistical analysis and interpretation, 2nd edition. Plymouth: PRIMER-E.
Clarke, K.R., Chapman, M.G., Somerfield, P.J. and Needham, H.R. (2006a) Dispersion-based weighting of species counts in assemblage analyses. Marine Ecology Progress Series 320, 11–27.
Clarke, K.R., Somerfield, P.J. and Chapman, M.G. (2006b) On resemblance measures for ecological studies, including taxonomic dissimilarities and a zero-adjusted Bray–Curtis coefficient for denuded assemblages. Journal of Experimental Marine Biology and Ecology 330, 55–80.
Clarke, K.R., Warwick, R.M. and Brown, B.E. (1993) An index showing breakdown of seriation, related to disturbance, in a coral-reef assemblage. Marine Ecology Progress Series 102, 153–160.
Clifford, H.T. and Stephenson, W. (1975) An introduction to numerical classification. New York: Academic Press.
Faith, D.P., Minchin, P.R. and Belbin, L. (1987) Compositional dissimilarity as a robust measure of ecological distance. Vegetatio 69, 57–68.
Field, J.G., Clarke, K.R. and Warwick, R.M. (1982) A practical strategy for analysing multispecies distribution patterns. Marine Ecology Progress Series 8, 37–52.
Gower, J.C. (1971) A general coefficient of similarity and some of its properties. Biometrics 27, 857–872.
Gray, J.S., Aschan, M., Carr, M.R., Clarke, K.R., Green, R.H., Pearson, T.H., Rosenberg, R. and Warwick, R.M. (1988) Analysis of community attributes of the benthic macrofauna of Frierfjord/Langesundfjord and in a mesocosm experiment. Marine Ecology Progress Series 46, 151–165.
Hallett, C.S., Valesini, F.J. and Clarke, K.R. (2012) A method for selecting health index metrics in the absence of independent measures of ecological condition. Ecological Indicators 19, 240–252.
Kruskal, J.B. (1964) Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis. Psychometrika 29, 1–27.
Legendre, P. and Legendre, L. (1998) Numerical ecology. 2nd English edition. Amsterdam: Elsevier.
Mantel, N. (1967) The detection of disease clustering and a generalized regression approach. Cancer Research 27, 209–220.
McArdle, B.H. and Anderson, M.J. (2001) Fitting multivariate models to community data: a comment on distance-based redundancy analysis. Ecology 82, 290–297.
Mumby, P.J., Clarke, K.R. and Harborne, A.R. (1996) Weighting species abundance estimates for marine resources assessment. Aquatic Conservation: Marine and Freshwater Ecosystems 6, 115–120.
Olsgard, F. and Somerfield, P.J. (2000) Surrogates in marine benthic investigations—which taxonomic unit to target? Journal of Aquatic Ecosystem Stress and Recovery 7, 25–42.
Olsgard, F., Somerfield, P.J. and Carr, M.R. (1997) Relationships between taxonomic resolution and data transformations in analyses of a macrobenthic community along an established pollution gradient. Marine Ecology Progress Series 149, 173–181.
Olsgard, F., Somerfield, P.J. and Carr, M.R. (1998) Relationships between taxonomic resolution, macrobenthic community patterns and disturbance. Marine Ecology Progress Series 172, 25–36.
Pearson, K. (1901) On lines and planes of closest fit to systems of points in space. Philosophical Magazine 2, 559–572.
R Core Team (2013) R: a language and environment for statistical computing. Vienna: R Foundation for Statistical Computing.
Sneath, P. (1957) The application of computers to taxonomy. Journal of General Microbiology 17, 201–226.
Somerfield, P.J. and Clarke, K.R. (1995) Taxonomic levels, in marine community studies, revisited. Marine Ecology Progress Series 127, 113–119.
Tweedley, J.R. and Hallett, C.S. (2013) Monitoring the effects of artificial oxygenation on biota. Perth: Swan River Trust, Perth, 62 pp.
Tweedley, J.R., Warwick, R.M., Valesini, F.J., Platell, M.E. and Potter, I.C. (2012) The use of benthic macroinvertebrates to establish a benchmark for evaluating the environmental quality of microtidal, temperate southern hemisphere estuaries. Marine Pollution Bulletin 64, 1210–1221.
Valesini, F.J., Potter, I.C. and Clarke, K.R. (2004) To what extent are the fish compositions at nearshore sites along a heterogeneous coast related to habitat type? Estuarine, Coastal and Shelf Science 60, 737–754.
Valesini, F.J., Hourston, M., Wildsmith, M.D., Coen, N.J. and Potter, I.C. (2010) New quantitative approaches for classifying and predicting local-scale habitats in estuaries. Estuarine, Coastal and Shelf Science 86, 645–664.
Valesini, F.J., Tweedley, J.R., Clarke, K.R. and Potter, I.C. (in press) The importance of local, system-wide and regional spatial scales in structuring temperate estuarine fish communities. Estuaries and Coasts.
Warton, D.I., Wright, S.T. and Wang, Y. (2012) Distance-based multivariate analyses confound location and dispersion effects. Methods in Ecology and Evolution 3, 89–101.
Whittaker, R.H. (1952) A study of summer foliage insect communities in the Great Smoky Mountains. Ecological Monographs 22, 1–44.
Wildsmith, M.D., Rose, T.H., Potter, I.C., Warwick, R.M. and Clarke, K.R. (2011) Benthic macroinvertebrates as indicators of environmental deterioration in a large microtidal estuary. Marine Pollution Bulletin 62, 525–538.
Wilkinson, L. (1994) Advanced Applications: Systat for DOS version 6. Chicago, IL: SYSTAT Inc.
Wilkinson, L. and Friendly, M. (2009) The history of the cluster heat map. The American Statistician 63, 179–184.