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Mitochondrial genome rearrangement in a hydrothermal vent-endemic lineage of provannid gastropods provides a new DNA marker for phylogeographical studies

Published online by Cambridge University Press:  21 November 2012

Hiroka Hidaka ,
Hiromi Watanabe ,
Yasunori Kano  and
Shigeaki Kojima
Hiroka Hidaka
Affiliation:
Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8561, Japan Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8564, Japan
Hiromi Watanabe
Affiliation:
Japan Agency for Marine–Earth Science and Technology, 2-15 Natsushima-cho, Yokosuka, Kanagawa 237-0061, Japan
Yasunori Kano
Affiliation:
Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8564, Japan
Shigeaki Kojima*
Affiliation:
Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8561, Japan Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8564, Japan
*
Correspondence should be addressed to: S. Kojima, Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8564, Japan email: kojima@aori.u-tokyo.ac.jp
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Abstract

The nucleotide sequences of mitochondrial DNA fragments containing genes for cytochrome c oxidase subunits I and II, ATPase subunits 6 and 8, large and small subunits of rRNA, and 9 tRNAs were determined using 2 genetically distinct representative specimens of the hydrothermal vent-endemic genus, Alviniconcha, and for the hydrothermal vent-endemic species, Ifremeria nautilei (Provannidae: Caenogastropoda: Mollusca). All 3 specimens showed tRNATrp gene translocation. To determine the time point at which this translocation occurred, we determined the nucleotide sequences of fragments containing 7 tRNA genes for another 3 Alviniconcha and 2 Ifremeria specimens, as well as for 7 related species. Our findings indicated that the translocation occurred in a common ancestor of the Alviniconcha and Ifremeria genera. Relatively long non-coding regions were observed on both sides of the tRNATrp gene and at the original position of this gene in all the Alviniconcha and Ifremeria gastropod specimens. Overall, the mitochondrial non-coding regions appear to provide much more information about genetic structure than the mitochondrial COI gene does and could therefore be a valuable marker for future studies.

Keywords

mitochondrial genomerearrangementprovannidAlviniconcha spp.Ifremeria nautileihydrothermal vent
Type
Research Article
Information
Journal of the Marine Biological Association of the United Kingdom , Volume 93 , Issue 4 , June 2013 , pp. 1053 - 1058
Copyright
Copyright © Marine Biological Association of the United Kingdom 2012 

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