Austin, B, Austin, D, Sutherland, R, Thompson, F and Swings, J (2005) Pathogenicity of vibrios to rainbow trout (Oncorhynchus mykiss, Walbaum) and Artemia nauplii. Environmental Microbiology 7, 1488–1495.
Ballesteros, E (2006) Mediterranean coralligenous assemblages: a synthesis of present knowledge. Oceanography and Marine Biology 44, 123–195.
Bally, M and Garrabou, J (2007) Thermodependent bacterial pathogens and mass mortalities in temperate benthic communities: a new case of emerging disease linked to climate change. Global Change Biology 13, 2078–2088.
Bell, JJ, McGrath, E, Biggerstaff, A, Bates, T, Bennett, H, Marlow, J and Shaffer, M (2015) Sediment impacts on marine sponges. Marine Pollution Bulletin 94, 5–13.
Ben-Haim, Y and Rosenberg, E (2002) A novel Vibrio sp. pathogen of the coral Pocillopora damicornis. Marine Biology 141, 47–55.
Ben-Haim, Y, Thompson, F, Thompson, C, Cnockaert, M, Hoste, B, Swings, J and Rosenberg, E (2003) Vibrio coralliilyticus sp. nov., a temperature-dependent pathogen of the coral Pocillopora damicornis. International Journal of Systematic and Evolutionary Microbiology 53, 309–315.
Bertolino, M, Cerrano, C, Bavestrello, G, Carella, M, Pansini, M and Calcinai, B (2013) Diversity of Porifera in the Mediterranean coralligenous accretions, with description of a new species. ZooKeys 336, 1–37.
Beşiktepe, ŞT, Sur, Hİ, Özsoy, E, Latif, MA, Oǧuz, T and Ünlüata, Ü (1994) The circulation and hydrography of the Marmara Sea. Progress in Oceanography 34, 285–334.
Blanquer, A, Uriz, MJ, Cebrian, E and Galand, PE (2016) Snapshot of a bacterial microbiome shift during the early symptoms of a massive sponge die-off in the Western Mediterranean. Frontiers in Microbiology 7, 1–10.
Bo, M, Bavestrello, G, Canese, S, Giusti, M, Angiolillo, M, Cerrano, C, Salvati, E and Greco, S (2010) Coral assemblage off the Calabrian Coast (South Italy) with new observations on living colonies of Antipathes dichotoma. Italian Journal of Zoology 78, 231–242.
Bonhomme, D, Garrabou, J, Pérez, T, Sartoretto, S and Harmelin, J (2003) Impact and recovery from a mass mortality event of the gorgonian Paramuricea clavata populations on the French Mediterranean coasts. Geophysical Research Abstracts 5, 10676.
Bruno, JF, Petes, LE, Drew Harvell, C and Hettinger, A (2003) Nutrient enrichment can increase the severity of coral diseases. Ecology Letters 6, 1056–1061.
Burke, L, Reytar, K, Spalding, M and Perry, A (2011) Reefs at Risk Revisited. Washington, DC: World Resources Institute.
Cerrano, C, Bavestrello, G, Bianchi, CN, Cattaneo-Vietti, R, Bava, S, Morganti, C, Morri, C, Picco, P, Sara, G, Schiaparelli, S, Siccardi, A and Sponga, F (2000) A catastrophic mass-mortality episode of gorgonians and other organisms in the Ligurian Sea (North-western Mediterranean), summer 1999. Ecology Letters 3, 284–293.
Cerrano, C, Arillo, A, Azzini, F, Calcinai, B, Castellano, L, Muti, C, Valisano, L, Zega, G and Bavestrello, G (2005) Gorgonian population recovery after a mass mortality event. Aquatic Conservation: Marine and Freshwater Ecosystems 15, 147–157.
Cervino, JM, Hayes, RL, Polson, SW, Polson, SC, Goreau, TJ, Martinez, RJ and Smith, GW (2004) Relationship of Vibrio species infection and elevated temperatures to yellow blotch/band disease in Caribbean corals. Applied and Environmental Microbiology 70, 6855–6864.
Coles, SL and Ruddy, L (1995) Comparison of water quality and reef coral mortality and growth in southeastern Kane'ohe Bay, O'ahu, Hawai'i, 1990 to 1992, with conditions before sewage diversion. Pacific Science 49, 247–265.
Coma, R, Ribes, M, Zabala, M and Gili, J-M (1995) Reproduction and cycle of gonadal development in the Mediterranean gorgonian Paramuricea clavata. Marine Ecology Progress Series 117, 173–183.
Coma, R, Linares, C, Ribes, M, Diaz, D, Garrabou, J and Ballesteros, E (2006) Consequences of a mass mortality in populations of Eunicella singularis (Cnidaria: Octocorallia) in Menorca (NW Mediterranean). Marine Ecology Progress Series 327, 51–60.
Culling, CFA (1963) Handbook of Histopathological Techniques, 2nd edition. London: Butterworth and Co.
Cupido, R, Cocito, S, Sgorbini, S, Bordone, A and Santangelo, G (2008) Response of a gorgonian (Paramuricea clavata) population to mortality events: recovery or loss? Aquatic Conservation: Marine and Freshwater Ecosystems 18, 984–992.
Dizbay, M, Adisen, E, Kustimur, S, Sari, N, Cengiz, B, Yalcin, B, Kalkanci, A, Gonul, II and Sugita, T (2009) Fungemia and cutaneous zygomycosis due to Mucor circinelloides in an intensive care unit patient: case report and review of literature. Japanese Journal of Infectious Diseases 62, 146–148.
Erftemeijer, PLA, Riegl, B, Hoeksema, BW and Todd, PA (2012) Environmental impacts of dredging and other sediment disturbances on corals: a review. Marine Pollution Bulletin 64, 1737–1765.
Fabricius, KE (2005) Effects of terrestrial runoff on the ecology of corals and coral reefs: review and synthesis. Marine Pollution Bulletin 50, 125–146.
Fabricius, KE, Golbuu, Y and Victor, S (2007) Selective mortality in coastal reef organisms from an acute sedimentation event. Coral Reefs 26, 69.
Garrabou, J, Bensoussan, N, Pairaud, I, Garreau, P, Somot, S, Linares, C, Kersting, D, Cebrian, D, de Caralt, S, Kipson, S, Ledoux, JB and Frleta-Valić, M (2013) Assessing climate change impacts on marine biodiversity conservation: the case study of mass mortality events in the NW Mediterranean basin. CLIMCARES CLimate Impacts on Mediterranean Coastal AREaS Project Final report, June 2013, 49 pp.
Garrabou, J, Coma, R, Bensoussan, N, Bally, M, Chevaldonné, P, Cigliano, M, Diaz, D, Harmelin, JG, Gambi, MC, Kersting, DK, Ledoux, JB, Lejeusne, C, Linares, C, Marschal, C, Pérez, T, Ribes, M, Romano, JC, Serrano, E, Teixido, N, Torrents, O, Zabala, M, Zuberer, F and Cerrano, C (2009) Mass mortality in Northwestern Mediterranean rocky benthic communities: effects of the 2003 heat wave. Global Change Biology 15, 1090–1103.
Gatesoupe, F-J, Lambert, C and Nicolas, J-L (1999) Pathogenicity of Vibrio splendidus strains associated with turbot larvae, Scophthalmus maximus. Journal of Applied Microbiology 87, 757–763.
Geiser, DM, Taylor, JW, Ritchie, KB and Smith, GW (1998) Cause of sea fan death in the West Indies. Nature 394, 137–138.
Gómez-León, J, Villamil, L, Lemos, M, Novoa, B and Figueras, A (2005) Isolation of Vibrio alginolyticus and Vibrio splendidus from aquacultured carpet shell clam (Ruditapes decussatus) larvae associated with mass mortalities. Applied and Environmental Microbiology 71, 98–104.
Hall, TA (1999) Bioedit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Proceedings of the Nucleic Acids Symposium Series 41, 95–98.
Hall-Spencer, JM, Pike, J and Munn, CB (2007) Diseases affect cold-water corals too: Eunicella verrucosa (Cnidaria: Gorgonacea) necrosis in SW England. Diseases of Aquatic Organisms 76, 87–97.
Hanley, J (2011) Environmental monitoring programs on recent capital dredging projects in the Pilbara (2003–10): a review. Australian Petroleum Production & Exploration Association (APPEA) 51, 273–294.
Harvell, CD, Mitchell, CE, Ward, JR, Altizer, S, Dobson, AP, Ostfeld, RS and Samuel, MD (2002) Climate warming and disease risks for terrestrial and marine biota. Science 296, 2158–2162.
Haywood, MDE, Dennis, D, Thomson, DP and Pillans, RD (2016) Mine waste disposal leads to lower coral cover, reduced species richness and a predominance of simple coral growth forms on a fringing coral reef in Papua New Guinea. Marine Environmental Research 115, 36–48.
Hendrick, VJ, Hutchison, ZL and Last, KS (2016) Sediment burial intolerance of marine macroinvertebrates. PLoS ONE 11, e0149114.
Huete-Stauffer, C, Vielmini, I, Palma, M, Navone, A, Panzalis, P, Vezzulli, L, Misic, C and Cerrano, C (2011) Paramuricea clavata (Anthozoa, Octocorallia) loss in the Marine Protected Area of Tavolara (Sardinia, Italy) due to a mass mortality event. Marine Ecology 32(s1), 107–116.
Iwen, PC, Sigler, L, Noel, RK and Freifeld, AG (2007) Mucor circinelloides was identified by molecular methods as a cause of primary cutaneous zygomycosis. Journal of Clinical Microbiology 45, 636–640.
Karan, MA, Tunçcan, ÖG, Kalkancı, A, Arman, D and Kuştimur, S (2014) Widespread colonization of Mucor circinelloides in a patient with type 2 diabetes and colon cancer: case report. Turkiye Klinikleri Journal of Case Reports 22, 186–190.
Kayisoglu, M (2016) Investigation of the Interaction Between the Black Sea and the Sea of Marmara with Monthly Data Series of Temperature and Salinity (Master thesis). Istanbul University Institute of Marine Sciences and Management, Turkey.
Ke, X, Wang, J, Li, M, Gu, Z and Gong, X (2009) First report of Mucor circinelloides occurring on yellow catfish (Pelteobagrus fulvidraco) from China. FEMS Microbiology Letters 302, 144–150.
Krediet, CJ, Ritchie, KB, Paul, VJ and Teplitski, M (2013) Coral-associated micro-organisms and their roles in promoting coral health and thwarting diseases. Proceedings of the Royal Society of London B: Biological Sciences 280, 20122328.
Kurt, S, Karaburun, A and Demirci, A (2010) Coastline changes in Istanbul between 1987 and 2007. Scientific Research and Essays 5, 3009–3017.
Kushmaro, A, Banin, E, Loya, Y, Stackebrandt, E and Rosenberg, E (2001) Vibrio shiloi sp. nov., the causative agent of bleaching of the coral Oculina patagonica. International Journal of Systematic and Evolutionary Microbiology 51, 1383–1388.
Lacoste, A, Jalabert, F, Malham, S, Cueff, A, Gelebart, F, Cordevant, C, Lange, M and Poulet, S (2001) A Vibrio splendidus strain is associated with summer mortality of juvenile oysters Crassostrea gigas in the Bay of Morlaix (North Brittany, France). Diseases of Aquatic Organisms 46, 139–145.
Larkin, MA, Blackshields, G, Brown, N, Chenna, R, McGettigan, PA, McWilliam, H, Valentin, F, Wallace, IM, Wilm, A and Lopez, R (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947–2948.
Li, X, Huang, H, Lian, J, Yang, J, Ye, C, Chen, Y and Huang, L (2013) Coral community changes in response to a high sedimentation event: a case study in southern Hainan Island. Chinese Science Bulletin 58, 1028–1037.
Linares, C, Coma, R, Diaz, D, Zabala, M, Hereu, B and Dantart, L (2005) Immediate and delayed effects of a mass mortality event on gorgonian population dynamics and benthic community structure in the NW Mediterranean Sea. Marine Ecology Progress Series 305, 127–137.
Linares, C, Coma, R, Garrabou, J, Diaz, D and Zabala, M (2008 a) Size distribution, density and disturbance of two Mediterranean gorgonians: Paramuricea clavata and Eunicella singularis. Journal of Applied Ecology 45, 688–699.
Linares, C, Coma, R, Mariani, S, Díaz, D, Hereu, B and Zabala, M (2008 b) Early life history of the Mediterranean gorgonian Paramuricea clavata: implications for population dynamics. Invertebrate Biology 127, 1–11.
Linares, C, Coma, R and Zabala, M (2008 c) Effects of a mass mortality event on gorgonian reproduction. Coral Reefs 27, 27–34.
Lohrer, A, Hewitt, J, Thrush, S, Lundquist, C, Nicholls, P and Liefting, R (2003) Impact of Terrigenous Material Deposition on Subtidal Benthic Communities. Hamilton: Auckland Regional Council, Technical Publication No. 217.
Luna, G, Biavasco, F and Danovaro, R (2007) Bacteria associated with the rapid tissue necrosis of stony corals. Environmental Microbiology 9, 1851–1857.
Luna, GM, Bongiorni, L, Gili, C, Biavasco, F and Danovaro, R (2010) Vibrio harveyi as a causative agent of the White Syndrome in tropical stony corals. Environmental Microbiology Reports 2, 120–127.
Maina, J, de Moel, H, Zinke, J, Madin, J, McClanahan, T and Vermaat, JE (2013) Human deforestation outweighs future climate change impacts of sedimentation on coral reefs. Nature Communications 4, 1986.
Nagelkerken, I, Buchan, K, Smith, G, Bonair, K, Bush, P, Garzon-Ferreira, J, Botero, L, Gayle, P, Harvell, C and Heberer, C (1997) Widespread disease in Caribbean sea fans: II. Patterns of infection and tissue loss. Marine Ecology Progress Series 160, 255–263.
Nepote, E, Bianchi, CN, Morri, C, Chiantore, M and Montefalcone, M (2016) Pattern and intensity of human impact on coral reefs depend on depth along the reef profile and on the descriptor adopted. Estuarine Coastal and Shelf Science 178, 86–91.
Nepote, E, Bianchi, CN, Morri, C, Ferrari, M and Montefalcone, M (2017) Impact of a harbour construction on the benthic community of two shallow marine caves. Marine Pollution Bulletin 114, 35–45.
Özsoy, E, Çağatay, MN, Balkıs, N, Balkıs, N and Öztürk, B (eds) (2016) The Sea of Marmara; Marine Biodiversity, Fisheries, Conservation and Governance. Istanbul: Turkish Marine Research Foundation (TUDAV). Publication No: 42.
Pascual, J, Macián, MC, Arahal, DR, Garay, E and Pujalte, MJ (2010) Multilocus sequence analysis of the central clade of the genus Vibrio by using the 16S rRNA, recA, pyrH, rpoD, gyrB, rctB and toxR genes. International Journal of Systematic and Evolutionary Microbiology 60, 154–165.
Pastorok, RA and Bilyard, GR (1985) Effects of sewage pollution on coral-reef communities. Marine Ecology Progress Series. Oldendorf 21, 175–189.
Perez, T, Garrabou, J, Sartoretto, S, Harmelin, J-G, Francour, P and Vacelet, J (2000) Mortalité massive d'invertébrés marins : un événement sans précédent en Méditerranée nord-occidentale. Comptes Rendus de l'Académie des Sciences – Series III – Sciences de la Vie 323, 853–865.
Peters, EC (2015) Diseases of coral reef organisms. In Birkeland C. (ed.), Coral Reefs in the Anthropocene. Dordrecht: Springer, pp 147–178.
Ponti, M, Perlini, RA, Ventra, V, Grech, D, Abbiati, M and Cerrano, C (2014) Ecological shifts in Mediterranean coralligenous assemblages related to gorgonian forest loss. PLoS ONE 9, e102782.
Prado, S, Romalde, JL, Montes, J and Barja, JL (2005) Pathogenic bacteria isolated from disease outbreaks in shellfish hatcheries. First description of Vibrio neptunius as an oyster pathogen. Diseases of Aquatic Organisms 67, 209–215.
Raymundo, L, Couch, C and Harvell, CD (eds) (2008) Coral Disease Handbook: Guidelines for Assessment, Monitoring and Management. Melbourne: Currie Communications.
Richardson, M (2009) The ecology of the Zygomycetes and its impact on environmental exposure. Clinical Microbiology and Infection 15(s5), 2–9.
Rivetti, I, Fraschetti, S, Lionello, P, Zambianchi, E and Boero, F (2014) Global warming and mass mortalities of benthic invertebrates in the Mediterranean Sea. PLoS ONE 9, e115655.
Rivetti, I, Boero, F, Fraschetti, S, Zambianchi, E and Lionello, P (2017) Anomalies of the upper water column in the Mediterranean Sea. Global and Planetary Change 151, 68–79.
Rubio-Portillo, E, Izquierdo-Muñoz, A, Gago, JF, Rosselló-Mora, R, Antón, J and Ramos-Esplá, AA (2016) Effects of the 2015 heat wave on benthic invertebrates in the Tabarca Marine Protected Area (southeast Spain). Marine Environmental Research 122, 135–142.
Santangelo, G, Cupido, R, Cocito, S, Bramanti, L, Priori, C, Erra, F and Iannelli, M (2015) Effects of increased mortality on gorgonian corals (Cnidaria, Octocorallia): different demographic features may lead affected populations to unexpected recovery and new equilibrium points. Hydrobiologia 759, 171–187.
Santos, SR and Ochman, H (2004) Identification and phylogenetic sorting of bacterial lineages with universally conserved genes and proteins. Environmental Microbiology 6, 754–759.
Schoch, CL, Seifert, KA, Huhndorf, S, Robert, V, Spouge, JL, Levesque, CA, Chen, W, Bolchacova, E, Voigt, K and Crous, PW (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences USA 109, 6241–6246.
Shahidul Islam, M and Tanaka, M (2004) Impacts of pollution on coastal and marine ecosystems including coastal and marine fisheries and approach for management: a review and synthesis. Marine Pollution Bulletin 48, 624–649.
Sheppard, C, Al-Husiani, M, Al-Jamali, F, Al-Yamani, F, Baldwin, R, Bishop, J, Benzoni, F, Dutrieux, E, Dulvy, NK and Durvasula, SRV (2010) The Gulf: a young sea in decline. Marine Pollution Bulletin 60, 13–38.
Sheridan, C, Kramarsky-Winter, E, Sweet, M, Kushmaro, A and Leal, MC (2013) Diseases in coral aquaculture: causes, implications and preventions. Aquaculture 396, 124–135.
Smith, GW, Ives, LD, Nagelkerken, IA and Ritchie, KB (1996) Caribbean sea-fan mortalities. Nature 383, 487–487.
Stabili, L, Cardone, F, Alifano, P, Tredici, SM, Piraino, S, Corriero, G and Gaino, E (2012) Epidemic mortality of the sponge Ircinia variabilis (Schmidt, 1862) associated to proliferation of a Vibrio bacterium. Microbial Ecology 64, 802–813.
Suau, A, Bonnet, R, Sutren, M, Godon, J-J, Gibson, GR, Collins, MD and Doré, J (1999) Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Applied and Environmental Microbiology 65, 4799–4807.
Thompson, FL, Iida, T and Swings, J (2004) Biodiversity of vibrios. Microbiology and Molecular Biology Reviews 68, 403–431.
Thrush, SF, Hewitt, JE, Cummings, VJ, Ellis, JI, Hatton, C, Lohrer, A and Norkko, A (2004) Muddy waters: elevating sediment input to coastal and estuarine habitats. Frontiers in Ecology and the Environment 2, 299–306.
Topaloğlu, B (2016) Sponges of the Sea of Marmara with a new record for Turkish sponge fauna. In Özsoy, E, Çağatay, MN, Balkıs, N, Balkıs, N and Öztürk, B (eds), The Sea of Marmara; Marine Biodiversity, Fisheries, Conservation and Governance. Istanbul: Turkish Marine Research Foundation (TUDAV). Publication No. 42, pp. 418–450.
Topaloğlu, B, Evcen, A and Çınar, ME (2016) Sponge fauna in the Sea of Marmara. Turkish Journal of Fisheries and Aquatic Sciences 16, 51–59.
Topçu, NE and Öztürk, B (2013) Octocoral diversity of Balıkçı Island, the Marmara Sea. Journal of the Black Sea/Mediterranean Environment 19, 46–57.
Topçu, NE and Öztürk, B (2015) Composition and abundance of octocorals in the Sea of Marmara, where the Mediterranean meets the Black Sea. Scientia Marina 79, 125–135.
Topçu, NE and Öztürk, B (2016 a) First insights into the demography of the rare gorgonian Spinimuricea klavereni in the Mediterranean Sea. Marine Ecology 37, 1154–1160.
Topçu, NE and Öztürk, B (2016 b) Reproduction in the Mediterranean endemic gorgonian Spinimuricea klavereni (Anthozoa, Octocorallia, Plexauridae). Invertebrate Biology 135, 13–19.
Topçu, NE, Martell, LF, Yılmaz, İN and İşinibilir, M (2016) Hydrozoans as pioneer colonizers after a mass mortality event in the Sea of Marmara. Rapp. Comm. int. Mer Médit. 41, 369.
Turkoglu, M (2016) Bloom dynamics of Emiliania Huxleyi (Lohmann) Hay & Mohler, 1967 in the Sea of Marmara: a review. In Thajuddin, N and Dhanasekaran, D (eds), Algae, Organisms for Imminent Biotechnology. IntechOpen. Published online 29 June 2016.
Ushijima, B, Smith, A, Aeby, GS and Callahan, SM (2012) Vibrio owensii induces the tissue loss disease Montipora white syndrome in the Hawaiian reef coral Montipora capitata. PLoS ONE 7, e46717.
Vezzulli, L, Previati, M, Pruzzo, C, Marchese, A, Bourne, DG and Cerrano, C (2010) Vibrio infections triggering mass mortality events in a warming Mediterranean Sea. Environmental Microbiology 12, 2007–2019.
Vezzulli, L, Pezzati, E, Huete-Stauffer, C, Pruzzo, C and Cerrano, C (2013) 16SrDNA pyrosequencing of the Mediterranean gorgonian Paramuricea clavata reveals a link among alterations in bacterial holobiont members, anthropogenic influence and disease outbreaks. PLoS ONE 8, e67745.
Ward, JR and Lafferty, KD (2004) The elusive baseline of marine disease: are diseases in ocean ecosystems increasing? PLOS Biology 2, e120.
White, TJ, Bruns, T, Lee, S and Taylor, J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols: a Guide to Methods and Applications 18, 315–322.
Zhang, Z, Schwartz, S, Wagner, L and Miller, W (2000) A greedy algorithm for aligning DNA sequences. Journal of Computational Biology 7, 203–214.
Zhao, Y, Zhang, W, Xu, W, Mai, K, Zhang, Y and Liufu, Z (2012) Effects of potential probiotic Bacillus subtilis T13 on growth, immunity and disease resistance against Vibrio splendidus infection in juvenile sea cucumber Apostichopus japonicus. Fish and Shellfish Immunology 32, 750–755.