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Molecular profiling of foxtail millet (Setaria italica (L.) P. Beauv) from Central Himalayan Region for genetic variability and nutritional quality

Published online by Cambridge University Press:  28 May 2018

A. K. Trivedi
ICAR – National Bureau of Plant Genetic Resources, Regional Station Bhowali – 263132, Nainital (Uttarakhand), India
L. Arya
ICAR – National Bureau of Plant Genetic Resources, Pusa Campus, New Delhi – 110012, India
S. K. Verma
ICAR – National Bureau of Plant Genetic Resources, Regional Station Bhowali – 263132, Nainital (Uttarakhand), India
R. K. Tyagi
ICAR – National Bureau of Plant Genetic Resources, Pusa Campus, New Delhi – 110012, India
A. Hemantaranjan
Department of Plant Physiology, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi – 221005, India
M. Verma
ICAR – National Bureau of Plant Genetic Resources, Pusa Campus, New Delhi – 110012, India
V. P. Sharma
ICAR – National Bureau of Plant Genetic Resources, Pusa Campus, New Delhi – 110012, India
D. Saha
ICAR – National Bureau of Plant Genetic Resources, Pusa Campus, New Delhi – 110012, India
E-mail address:


Agriculture in the Central Himalayan Region depends on the availability of suitable germplasm as well as natural conditions. Due to extreme weather conditions, food and nutrition security is a major issue for communities inhabiting these remote and inaccessible areas. Millets are common crops grown in these areas. Foxtail millet (Setaria italica (L.) P. Beauv) is an important crop and forms a considerable part of the diet in this region. The aim of the present study was to explore, collect, conserve and evaluate the untapped genetic diversity of foxtail millet at the molecular level and discover variability in their nutritional traits. A total of 30 accessions having unique traits of agronomic importance were collected and molecular profiling was performed. A total of 63 alleles were generated with an average of 2.52 alleles per locus and average expected heterozygosity of 0.37 ± 0.231. Significant genetic variability was revealed through the genetic differentiation (Fst) and gene flow (Nm) values. Structure-based analysis divided whole germplasm into three sub-groups. Rich variability was found in nutritional traits such as dietary fibre in husked grains, carbohydrate, protein, lysine and thiamine content. The collected germplasm may be useful for developing nutritionally rich and agronomically beneficial varieties of foxtail millet and also designing strategies for utilization of unexploited genetic diversity for food and nutrition security in this and other similar agro-ecological regions.

Crops and Soils Research Paper
Copyright © Cambridge University Press 2018 

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These authors contributed equally to this work.

Present address: Asia-Pacific Consortium on Agricultural Biotechnology (APCoAB), Asia-Pacific Association of Agricultural Research Institutions (APAARI), 4th Floor FAO Annex Building, 202/1 Larn Luang Road, Promprab Sattrupai, Khlong Mahanak, Bangkok 10100, Thailand.


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