1.Kasuga, T, Taylor, JW and White, TJ (1999) Phylogenetic relationships of varieties and geographical groups of the human pathogenic fungus Histoplasma capsulatum Darling. Journal of Clinical Microbiology 37, 653–663.
2.Kasuga, T et al. (2003) Phylogeography of the fungal pathogen Histoplasma capsulatum. Molecular Ecology 12, 3383–3401.
3.Teixeira, MDM et al. (2016) Worldwide phylogenetic distributions and population dynamics of the genus Histoplasma. PLoS Neglected Tropical Diseases 10, e0004732.
4.Sepúlveda, VE et al. (2017) Genome sequences reveal cryptic speciation in the human pathogen Histoplasma capsulatum. MBio 8, e01339.
5.Carter, DA et al. (1996) Clinical isolates of Histoplasma capsulatum from Indianapolis, Indiana, have a recombining population structure. Journal of Clinical Microbiology 34, 2577–2584.
6.Carter, DA et al. (2001) Amplified single-nucleotide polymorphisms and a (GA)n microsatellite marker reveal genetic differentiation between populations of Histoplasma capsulatum from the Americas. Fungal Genetics and Biology 34, 37–48.
7.Taylor, ML et al. (2005) Geographical distribution of genetic polymorphism of the pathogen Histoplasma capsulatum isolated from infected bats, captured in a central zone of Mexico. FEMS Immunology and Medical Microbiology 45, 451–458.
8.Vite-Garín, T et al. (2014) The importance of molecular analyses for understanding the genetic diversity of Histoplasma capsulatum: an overview. Revista Iberoamericana de Micología 31, 11–15.
9.Vincent, RD et al. (1986) Classification of Histoplasma capsulatum isolates by restriction fragment polymorphisms. Journal of Bacteriology 165, 813–818.
10.Spitzer, ED et al. (1989) Use of mitochondrial and ribosomal DNA polymorphisms to classify clinical and soil isolates of Histoplasma capsulatum. Infection and Immunity 57, 1409–1412.
11.Keath, EJ, Kobayashi, GS and Medoff, G (1992) Typing of Histoplasma capsulatum by restriction fragment length polymorphisms in a nuclear gene. Journal of Clinical Microbiology 30, 2104–2107.
12.Kersulyte, D et al. (1992) Diversity among clinical isolates of Histoplasma capsulatum detected by polymerase chain reaction with arbitrary primers. Journal of Bacteriology 174, 7075–7079.
13.Woods, JP et al. (1993) Fast DNA isolation from Histoplasma capsulatum: methodology for arbitrary primer polymerase chain reaction based epidemiological and clinical studies. Journal of Clinical Microbiology 31, 463–464.
14.Reyes-Montes, MR et al. (1999) Relatedness analyses of Histoplasma capsulatum isolates from Mexican patients with AIDS-associated histoplasmosis by using histoplasmin electrophoretic profiles and randomly amplified polymorphic DNA patterns. Journal of Clinical Microbiology 37, 1404–1408.
15.Muniz, MDM et al. (2001) Genetic diversity of Histoplasma capsulatum strains isolated from soil, animals, and clinical specimens in Rio de Janeiro State, Brazil, by a PCR-based random amplified polymorphic DNA assay. Journal of Medical Microbiology 39, 4487–4494.
16.Boldo, XM et al. (2003) Genetic diversity among clinical isolates of Candida glabrata analyzed by randomly amplified polymorphic DNA and multilocus enzyme electrophoresis analyses. Journal of Clinical Microbiology 41, 4799–4804.
17.Hu, J, Van-Eysden, J and Quiros, CF (1995) Generation of DNA-based markers in specific genome regions by two-primer RAPD reactions. Genome Res. 4, 346–351.
18.Rohlf, FJ (1997) NTSYSpc. Numerical Taxonomy and Multivariate Analysis System, . New York: Applied Biostatistics. .
19.Manly, JF (1997) Randomization, Bootstrap and Monte Carlo Methods in Biology. London: Chapman and Hall. .
20.Efron, B (1982) .
21.Pavlícek, A, Hrdá, S and Flegr, J (1999) Freetree – Freeware program for construction of phylogenetic trees on the basis of distance data and bootstrap/jack knife analysis of the tree robustness. Application in the RAPD analysis of genus Frankelia. Folia Biologica (Praha) 45, 97–99.
22.Allnut, TR et al. (1999) Genetic variation in Fitzroya cupressoides (alerce), a threatened South American conifer. Molecular Ecology 8, 975–987.
23.Nei, M (1973) Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences of the United States of America 70, 3321–3323.
24.Zhivotovsky, LA (1999) Estimating population structure in diploids with multilocus dominant DNA markers. Molecular Ecology 8, 907–913.
26.Maynard Smith, J et al. (1993) How clonal are bacteria? Proceedings of the National Academy of Sciences of the United States of America 90, 4384–4388.
27.Haubold, B and Hudson, RR (2000) LIAN 3.0: detecting linkage disequilibrium in multilocus data. Bioinformatics (Oxford, England) 16, 847–848.
28.Ismail, NA et al. (2016) Molecular markers: a potential resource for ginger genetic diversity studies. Molecular Biology Reports 43, 1347–1358.
29.Maxwell, CS et al. (2018) Recent admixture between species of the fungal pathogen Histoplasma. Evolution Letters 2, 210–220.
30.Kwon-Chung, KJ (1972) Sexual stage of Histoplasma capsulatum. Science 175, 326.
31.Bubnick, M and Smulian, AG (2007) The MAT1 locus of Histoplasma capsulatum is responsive in a mating type-specific manner. Eukaryotic Cell 6, 616–621.
32.Rodríguez-Arellanes, G et al. (2013) Frequency and genetic diversity of the MAT1 locus of Histoplasma capsulatum isolates in Mexico and Brazil. Eukaryotic Cell 12, 1033–1038.
33.Almeida-Silva, F et al. (2018) Multiplex polymerase chain reaction as an improved method for screening Histoplasma capsulatum mating types. Memorias do Instituto Oswaldo Cruz 113, e180340.
34.Taylor, ML, Chávez-Tapia, CB and Reyes-Montes, MR (2000) Molecular typing of Histoplasma capsulatum isolated from infected bats, captured in Mexico. Fungal Genetics and Biology 30, 207–212.
35.Taylor, ML et al. (2012) Genetic diversity of Histoplasma capsulatum isolated from infected bats randomly captured in Mexico, Brazil, and Argentina, using the polymorphism of (GA)n microsatellite and its flanking regions. Fungal Biology 116, 308–317.
36.Landaburu, F et al. (2014) Genetic diversity of Histoplasma capsulatum strains isolated from Argentina based on nucleotide sequence variations in the internal transcribed spacer regions of rDNA. Mycoses 57, 299–306.