Lentic freshwater habitats are important centres of biodiversity within the infrequent ice-free oases across Antarctica. Given imminent climate changes, it is crucial to catalogue these habitats in order to provide baseline data for future monitoring and biological surveys. The lacustrine systems of Clearwater Mesa, a previously unexplored part of James Ross Island, north-eastern Antarctic Peninsula, are described here. We conducted basic geomorphological and limnological surveys over three Antarctic summers (2009–16) to characterize landscape evolution, infer the origin of lake basins and assess the variability in their water chemistry. Stable shallow lakes, formed in depressions between lava tumuli following the last deglaciation, were found to dominate the volcanic mesa, although several peripheral lakes in ice-proximal settings appear to have formed recently as a result of post-Neoglacial ice recession. We found large heterogeneity in conductivity (~10–7000 μS cm−1), despite the lithologically uniform substrate. This variability was shown to be related to lake type, basin type (open vs closed), meltwater source and proximity to the coast. Inter-annual differences were attributed to changes in sea spray influx and snow accumulation driven by variable weather conditions. Overall, the ion composition of lakes suggested that sea spray was the dominant source of ions, followed by the weathering of bedrock.

Heterotrophic soil protists encompass lineages that are both evolutionarily ancient and highly diverse, providing an untapped wealth of scientific insight. Yet the diversity of free-living heterotrophic terrestrial protists is still largely unknown. To contribute to our understanding of this diversity, we present a checklist of heterotrophic protists currently reported from terrestrial Antarctica, for which no comprehensive evaluation currently exists. As a polar continent, Antarctica is especially susceptible to rising temperatures caused by anthropogenic climate change. Establishing a baseline for future conservation efforts of Antarctic protists is therefore important. We performed a literature search and found 236 taxa identified to species and an additional 303 taxa identified to higher taxonomic levels in 54 studies spanning over 100 years of research. Isolated by distance, climate and the circumpolar vortex, Antarctica is the most extreme continent on Earth: it is not unreasonable to think that it may host physiologically and evolutionarily unique species of protists, yet currently most species discovered in Antarctica are considered cosmopolitan. Additional sampling of the more extreme intra-continental zones will probably result in the discovery of more novel and unique taxa.

Ninety-six mummified crabeater seals discovered at Seymour Island (Isla Marambio) are reported. Each specimen was georeferenced, photographed and assigned to five different taphonomic states. Previous work stated that seals at Seymour Island get stranded inland around the breeding season. However, it is not clear if the species breeds in this area. The abundance of crabeater seals and the ice condition along Admiralty Sound (Estrecho Bouchard) were obtained by aerial surveys during spring (2015–17). It appears that the species uses the strait as a passage to breeding grounds. Under heavy ice conditions, the seals become stranded in the middle section of this strait and wander inland through a valley that represents the mouth of an ephemeral stream that ends at the pack ice level. This situation was observed in 2014 and 2015 when recently dead seals were found, evidencing that this natural trap is still active. Nonetheless, in 2016 and 2017, during an early breakup of Admiralty Sound, the seals that remained in the area were more numerous than in 2015 but they did not get stranded inland. This early breakup may encourage the seals to breed there in the presence of open water areas with ice floes.

Adélie penguins are renowned for their natal philopatry on land-based colonies, requiring small pebbles to be used for nests. We report on an opportunistic observation via aerial survey, where hundreds of Adélie penguins were documented displaying nesting behaviours on fast ice ~3 km off the coast of Cape Crozier, which is one of the largest colonies in the world. We counted 426 Adélie penguins engaging in behaviours of pair formation, spacing similarly to normal nest distributions and lying in divots in the ice that looked like nests. On our first visit, it was noticed that the guano stain was bright pink, consistent with krill consumption, but had shifted to green over the course of ~2 weeks, indicating that the birds were fasting (a behaviour consistent with egg incubation). However, eggs were not observed. We posit four hypotheses that may explain the proximate causes of this behaviour and caution against future high-resolution satellite imagery interpretation due to the potential for confusing ice-nesting Adélie penguins with the presence of emperor penguin colonies.

We compared systematic and random survey techniques to estimate breeding population sizes of burrow-nesting petrel species on Marion Island. White-chinned (Procellaria aequinoctialis) and blue (Halobaena caerulea) petrel population sizes were estimated in systematic surveys (which attempt to count every colony) in 2009 and 2012, respectively. In 2015, we counted burrows of white-chinned, blue and great-winged (Pterodroma macroptera) petrels within 52 randomized strip transects (25 m wide, total 144 km). Burrow densities were extrapolated by Geographic Information System-derived habitat attributes (geology, vegetation, slope, elevation, aspect) to generate island-wide burrow estimates. Great-winged petrel burrows were found singly or in small groups at low densities (2 burrows ha−1); white-chinned petrel burrows were in loose clusters at moderate densities (3 burrows ha−1); and blue petrel burrows were in tight clusters at high densities (13 burrows ha−1). The random survey estimated 58% more white-chinned petrels but 42% fewer blue petrels than the systematic surveys. The results suggest that random transects are best suited for species that are widely distributed at low densities, but become increasingly poor for estimating population sizes of species with clustered distributions. Repeated fixed transects provide a robust way to monitor changes in colony density and area, but might fail to detect the formation/disappearance of new colonies.

Antarctica is one of the most suitable locations for the bioprospecting of psychrotrophic fungi, which play a key role in the nutrient cycle and organic material mineralization in cold environments. These actions mainly take place via the production of several cold-active extracellular enzymes. The aim of this study was to investigate the diversity of filamentous fungi from King George Island (25 De Mayo Island), Antarctica and their ability to produce extracellular hydrolytic enzymes at low temperatures. A total of 51 fungal isolates were obtained from 31 samples. Twelve genera were identified, with seven among the Ascomycota (Cadophora, Helotiales, Monographella, Oidodendron, Penicillium, Phialocephala, Phialophora, Phoma and Pseudogymnoascus), one Basidiomycota (Irpex) and two Mucoromycota (Mortierella and Mucor). Monographella lycopodina and Mucor zonatus, not previously reported in Antarctica, were identified. Nine isolates could not be identified to genus level and may represent novel species. Most of the studied fungi were psychrotrophic (76.5%). Nevertheless, only five isolates were able to grow at 35°C, 15°C being the optimal growth temperature for 65% of the fungal isolates. Results from enzyme production at low temperature revealed that the Antarctic environment contains metabolically diverse fungi, which represent potential tools for biotechnological applications in cold regions.

The small ice-free areas of Antarctica provide an essential habitat for most evident terrestrial biodiversity, as well as being disproportionately targeted by human activity. Visual detection of disturbance within these environments has become a useful tool for measuring areas affected by human impact, but questions remain as to what environmental consequences such disturbance actually has. To answer such questions, several factors must be considered, including the climate and biotic and abiotic characteristics. Although a body of research has established the consequences of disturbance at given locations, this paper was conceived in order to assess whether their findings could be generalized as a statement across the Antarctic continent. From a review of 31 studies within the Maritime Antarctic, Continental Antarctic and McMurdo Dry Valleys regions, we found that 83% confirmed impacts in areas of visible disturbance. Disturbance was found to modify the physical environment, consequently reducing habitat suitability as well as directly damaging biota. Visible disturbance was also associated with hydrocarbon and heavy metal contamination and non-native species establishment, reflecting the pressures from human activity in these sites. The results add significance to existing footprint measurements based on visual analysis, should aid on-the-ground appreciation of probable impacts in sites of disturbance and benefit environmental assessment processes.

Carrion in the form of dead seal pups and algal mats placed on soft bottom habitats at Explorers Cove and Salmon Bay, McMurdo Sound, attract scavenging invertebrates that are driven away by hydrogen sulphide produced by sulphate-reducing bacteria sequestered below a layer of Beggiatoa/Thioploca-like filamentous bacteria. This system is usually found for lipid-rich marine mammal carrion, but also occurred with natural algal mats.

Growth, which is intrinsically linked to environmental conditions including temperature and food availability are highly variable both temporally and spatially. Estimates of growth rates of the Southern Ocean euphausiid Thysanoessa macrura are currently restricted to limited studies which rely upon repeated sampling and length-frequency analysis to quantify growth rates. The instantaneous growth method (IGR) was used to measure the growth rate of T. macrura successfully in the southern Kerulen Plateau region during summer, providing the first IGR parameters for the Southern Ocean euphausiid species. Results of the four-day IGR incubation indicate a period of low somatic growth for adult T. macrura. Males had a longer intermoult period (IMP) (62 days) than females (42 days), but the sexes exhibited similar daily growth rates of 0.011 mm day−1 and 0.012 mm day−1 respectively. Juveniles exhibited the fastest growth, with an IMP of 13 days and daily growth rate of 0.055 mm day−1 indicating a prolonged growth season, similar to the Antarctic krill E. superba. Consequently, we highlight the usability of the IGR method and strongly encourage its use in developing a comprehensive understanding of spatial and seasonal growth patterns of T. macrura.

We developed a random, stratified, vertical longline survey in McMurdo Sound, Antarctica, to compare the local age and size composition, diet and reproductive status of Antarctic toothfish (Dissostichus mawsoni) with those observed from a vessel-based survey of the southern Ross Sea shelf that includes a McMurdo Sound stratum. Results indicated that southern McMurdo Sound toothfish were larger and older than those a short distance away in northern McMurdo Sound. These data, in addition to recoveries of tagged fish, suggest that the large toothfish in McMurdo Sound may have limited mixing with the rest of the population. The potential effects of climate change and fishing in northern areas on toothfish abundance in McMurdo Sound will depend on the mechanism of toothfish recruitment to McMurdo Sound. Understanding the ecological relationships between McMurdo Sound toothfish and the larger population is required to predict these impacts. Furthermore, because toothfish predators (type C killer whales Orcinus orca, Weddell seals Leptonychotes weddellii) are abundant in the south-west margins of the Ross Sea, it is important to monitor toothfish in McMurdo Sound as part of the monitoring programme for the Ross Sea region Marine Protected Area.

As bottom water warms, destabilisation of gas hydrates may increase the extent of methane-rich sediments. The authors present an assessment of organic carbon processing by the benthic community in methane-rich sediments, including one of the first investigations of inorganic C fixation in a non-hydrothermal vent setting. This topic was previously poorly studied, and there is much need to fill the gaps in knowledge of such ecosystems. The authors hypothesized that benthic C fixation would occur, and that a high biomass macrofaunal community would play a substantial role in organic C cycling. Experiments were conducted at a 257 m deep site off South Georgia. Sediment cores were amended with 13C and 15N labelled algal detritus, or 13C labelled bicarbonate solution. In the bicarbonate experiment, labelling of bacteria-specific phospholipid fatty acids provided direct evidence of benthic C fixation, with transfer of fixed C to macrofauna and dissolved organic carbon (DOC). In the algae experiment, macrofauna played an active role in organic carbon cycling. Compared to similar experiments, low temperature supressed the rates of community respiration and macrofaunal C uptake. While benthic C fixation occurred, the biological processing of organic carbon was dominantly controlled by low temperature and high photic zone productivity.

The shallow benthos along the western Antarctic Peninsula supports brown macroalgal forests with dense amphipod assemblages, commonly including Gondogeneia antarctica (Amsler et al. 2014). Gondogeneia antarctica and most other amphipods are chemically deterred from consuming the macroalgae (Amsler et al. 2014). They primarily consume diatoms, other microalgae, filamentous macroalgae and a few undefended macroalgal species, including Palmaria decipiens (Aumack et al. 2017). Although unpalatable when alive, G. antarctica and other amphipods will consume the chemically defended brown algae Himantothallus grandifolius and Desmarestia anceps within a few weeks of death (Amsler et al. 2014).

A survey of Antarctic toothfish (Dissostichus mawsoni) was conducted in the northern Ross Sea region during the winter of 2016 to document the timing and location of spawning activity, to collect biological information about reproductive status during the spawning season and to look for temporal signals in biological data from D. mawsoni that may indicate a spawning migration of mature toothfish from the continental slope region to the northern Ross Sea region. The 58 day survey showed that spawning of D. mawsoni began on some seamounts by early July. No changes were detected between winter and summer in length, age, sex ratio or condition factor distributions for D. mawsoni in the northern Ross Sea as hypothesized following a spawning migration from the slope to the northern Ross Sea region. These results suggest that the distribution of D. mawsoni in the Ross Sea is mainly accomplished through ontogenetic migration and not annual return spawning migrations.

Here we describe new microfossil assemblages for the Miocene Hobbs Glacier Formation and the first possibly indigenous assemblages for the Plio-Pleistocene Weddell Sea Formation on Seymour Island, West Antarctica. The assemblages are composed mainly of foraminifers, but radiolarians, calcitarchs and poriferan sclerites are also present. For the Hobbs Glacier Formation, we report the foraminifers Bolivina sp., Oolina globosa and Rosalina cf. globularis; and for the Weddell Sea Formation, we report Favulina hexagona, Globigerinita uvula, Globocassidulina cf. subglobosa and Psammosphaera fusca. The low abundance and diversity of microfossils, allied with the complex taphonomical processes that prevailed in Antarctic glacial–marine palaeoenvironments, make it impossible to define whether the assemblages are composed of a mixture of indigenous and re-elaborated specimens or exclusively of re-elaborated remains. Nevertheless, the indigenous nature of some specimens is suggested by their inherent fragility, excellent preservation and/or taxonomic association with indigenous assemblages from correlated strata. The taxonomic compositions are not directly comparable with other Antarctic assemblages, although most of the species were previously reported from pre-Quaternary or modern deposits of both West and East Antarctica. This lack of correspondence is probably due to preservation biases, but any further significance is hidden by the complex taphonomy of the deposits.

The keystone role of Antarctic krill, Euphausia superba Dana, in Southern Ocean ecosystems, means it is essential to understand the factors controlling their abundance and secondary production. One such factor that remains poorly known is the role of parasites. A recent study of krill diet using DNA analysis of gut contents provided a snapshot of the parasites present within 170 E. superba guts in a small area along the West Antarctic Peninsula. These parasites included Metschnikowia spp. fungi, Haptoglossa sp. peronosporomycetes, Lankesteria and Paralecudina spp. apicomplexa, Stegophorus sp. nematodes, and Pseudocollinia spp. ciliates. Of these parasites, Metschnikowia spp. fungi and Pseudocollinia spp. ciliates had previously been observed in E. superba, as had other genera of apicomplexans, though not Lankesteria and Paralecudina. In contrast, nematodes had previously only been observed in eggs of E. superba, and there are no literature reports of peronosporomycetes in euphausiids. Pseudocollinia spp., parasitoids which obligately kill their host, were the most frequently observed infection, with a prevalence of 12%. The wide range of observed parasites and the relatively high frequency of infections suggest parasites may play a more important role than previously acknowledged in E. superba ecology and population dynamics.