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19 - Signal processing

Published online by Cambridge University Press:  05 February 2015

Tim J. Stevens
Affiliation:
MRC Laboratory of Molecular Biology, Cambridge
Wayne Boucher
Affiliation:
University of Cambridge
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Summary

Signals

In science many different kinds of experiment involve the recording of signals: series of measurements that represent the variation in some kind of underlying physical property. The signal can then be interpreted, based on some theoretical model of the experiment. Commonly the recorded signal is one that varies over time, such as sound or radio waves, but it could also represent a variation in space, or indeed along any other kind of axis. In general a signal is represented by values that are directly recorded by instruments at specific, usually regular, intervals; although in some situations derived data, like a DNA sequence, can also be thought of in terms of signals.

If a signal varies in a regular manner, i.e. oscillates, then it is often the frequencies that occur within the signal that are of interest, rather than the original signal itself. This is because the underlying frequencies are generally characteristic of what made the signal. To take a toy example, if we have a peal of bells, where each bell has a different tone, we can record the variation of the overall sound signal over time. Then, by looking at the component frequencies we can discern the tones of the individual bells that made the sound. As we will illustrate, it is possible to convert the time signal into a spectrum of its component frequencies using what is known as a Fourier transform.

Type
Chapter
Information
Python Programming for Biology
Bioinformatics and Beyond
, pp. 382 - 400
Publisher: Cambridge University Press
Print publication year: 2015

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References

Fourier, J.B.J. (1822). Théorie Analytique de la Chaleur. Paris: Chez Firmin Didot, père et filsGoogle Scholar
Titchmarsh, E. (1948). Introduction to the Theory of Fourier Integrals (2nd edn.). Oxford: Clarendon PressGoogle Scholar
Cooley, J.W., and Tukey, J.W. (1965). An algorithm for the machine calculation of complex Fourier series. Mathematics of Computation 19: 297–301CrossRefGoogle Scholar
Press, W.H., Teukolsky, S.A., Vetterling, W.T., and Flannery, B.P. (2007). Numerical Recipes: The Art of Scientific Computing (3rd edn.). New York: Cambridge University PressGoogle Scholar

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  • Signal processing
  • Tim J. Stevens, MRC Laboratory of Molecular Biology, Cambridge, Wayne Boucher, University of Cambridge
  • Book: Python Programming for Biology
  • Online publication: 05 February 2015
  • Chapter DOI: https://doi.org/10.1017/CBO9780511843556.020
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  • Signal processing
  • Tim J. Stevens, MRC Laboratory of Molecular Biology, Cambridge, Wayne Boucher, University of Cambridge
  • Book: Python Programming for Biology
  • Online publication: 05 February 2015
  • Chapter DOI: https://doi.org/10.1017/CBO9780511843556.020
Available formats
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Save book to Google Drive

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Google Drive.

  • Signal processing
  • Tim J. Stevens, MRC Laboratory of Molecular Biology, Cambridge, Wayne Boucher, University of Cambridge
  • Book: Python Programming for Biology
  • Online publication: 05 February 2015
  • Chapter DOI: https://doi.org/10.1017/CBO9780511843556.020
Available formats
×