Skip to main content Accessibility help
×
Home
  • Print publication year: 2015
  • Online publication date: December 2014

Part V - New technologies: their current use and future potential

References

Brehm, J. M., Maxted, N., Ford-Lloyd, B. V. and Martins-Loução, M. A. (2007). National inventories of crop wild relatives and wild harvested plants: case-study for Portugal. Crop resources and crop evolution. Available at: http://www.springerlink.com/content/a56v59k4q5632324.
Bridson, G. D. R. (2004). BPH-2: periodicals with botanical content, 2 volumes. Pittsburgh, PA: Hunt Institute for Botanical Documentation.
Bridson, G. D. R. and Smith, E. R. (1991). B-P-H/S. Botanico-periodicum-huntianum/supplementum. Pittsburgh, PA: Hunt Institute for Botanical Documentation.
Brummitt, R. K. and Powell, J. M. (1992). Authors of plant names. Richmond: Royal Botanical Gardens, Kew. Available at: http://www.ipni.org/ipni/authorsearchpage.do.
Chaudhri, M. N, Vegter, I. H. and Wal, C. M. de (1972). Index herbariorum: a guide to the location and contents of the world’s public herbaria. Part 2 (3).Collectors I-L. Utrecht: International Bureau of Plant Taxonomy.
Dorr, L. J. and Nicolson, D. H. A. (2008–2009). Taxonomic literature. A selective guide to botanical publications and collections, with dates, commentaries and types. Second Edition. Suppl. 7–8. Utrecht: International Bureau for Plant Taxonomy and Nomenclature.
Lanjouw, J. and Stafleu, F. A. (1954–1957). Index herbariorum: a guide to the location and contents of the world’s public herbaria. Part 2(1–2). Collectors A-H. Utrecht: International Bureau of Plant Taxonomy and Nomenclature.
Lawrence, G. H. M., et al. (eds) (1968). B-P-H. Botanico-periodicum-huntianum. Pittsburgh: Hunt Botanical Library.
Majumdar, P. (2007). Semantic web: the future of WWW. Available at: http://hdl.handle.net/1944/584.
Penev. L., Lyal, C., Weitzman, A., Morse, D., King, D., Sautter, G., Georgiev, T., Morris, R., Catapano, T. and Agosti, D. (2011). XML schemas and mark-up practices of taxonomic literature. ZooKeys, 150 (Special issue): 89–116.
Stafleu, F. A. (1967). Taxonomic literature. A selective guide to botanical publications with dates, commentaries and types. Utrecht: International Bureau for Plant Taxonomy and Nomenclature.
Stafleu, F. A. and Cowan, R. S. (1976–1988). Taxonomic literature. A selective guide to botanical publications and collections with dates, commentaries and types, Second Edition. Utrecht: International Bureau for Plant Taxonomy and Nomenclature.
Stafleu, F. A. and Mennega, E. A. (1992–2000). Taxonomic literature. A selective guide to botanical publications and collections with dates, commentaries and types, Second Edition, Suppls 1–6. Utrecht: International Bureau for Plant Taxonomy and Nomenclature.
Vegter, I. H. (1976–1988). Index herbariorum: a guide to the location and contents of the world’s public herbaria. Part 2(4)-2(7). Collectors M–Z. Utrecht: International Bureau for Plant Taxonomy and Nomenclature.
Willis, A., King, D., Morse, D., Dil, A., Lyal, C. and Roberts, D. (2010). From XML to XML: the why and how of making the biodiversity literature accessible to researchers. Proceedings of the Seventh International Conference on Language Resources and Evaluation (LREC). Available at: http://www.lrec-conf.org/proceedings/lrec2010/index.html.
Willis, A., Morse, D., Dil, A., King, D., Roberts, D and Lyal, C. (2011). Improving search in scanned documents: looking for OCR mismatches. In Workshop on advanced technologies for digital libraries, Trento, Italy, September 8, 2009, R. Bernardi, S. Chambers and B. Gottfried (eds). Heidelberg, New York: Springer, pp. 58–61.

References

Berendsohn, W. G. (1995). The concept of ‘potential taxa’ in databases. Taxon, 44: 207–212.
Bisby, F. A., Roskov, Y. R., Orrell, T. M., Nicolson, D., Paglinawan, L. E., Bailly, N., Kirk, P. M., Bourgoin, T. and van Hertum, J. (eds) (2008). Species 2000 and ITIS Catalogue of Life: 2008 Annual Checklist. [CD-ROM], Reading: Species. Available at: http://www.catalogueoflife.org/annual-checklist/2008.
Brickell, C. D., Alexander, C., David, J. C., Hetterscheid, W. L. A., Leslie, A. C., Malecot, V., Jin, X. B. and Cubey, J. J. (2009). International code of nomenclature for cultivated plants (ICNCP or cultivated plant code) incorporating the rules and recommendations for naming plants in cultivation, Eighth Edition. Regnum Vegetabile, 151, Scripta Horticulturae, 10. Leuven: International Society for Horticultural Science.
Cantino, P. D. and Queiroz, K. de (2010). International code of phylogenetic nomenclature, version 4c. Available at: http://www.ohio.edu/phylocode/PhyloCode4c.pdf.
Franz, N., Peet, M., Robert, K. and Weakley, A. S. (2004). On the use of taxonomic concepts in support of biodiversity research and taxonomy. In The new taxonomy, Q. D. Wheeler (ed.). Boca Raton, FL: CRC Press, pp. 61–84.
Geoffroy, M. and Berendsohn, W. G. (2003). The concept problem in taxonomy: importance, components, approaches. Schriftenreihe für Vegetationskunde, 39: 5–14.
Kennedy, J. B., Hyam, R., Kukla, R. and Paterson, T. (2006). Standard data model representation for taxonomic information. OMICS: A Journal of Integrative Biology, 10: 220–230.
Koperski, M., Geoffroy, M., Braun, W. and Gradstein, S. R. (2000). Referenzliste der moose Deutschland. Schriftenreihe Vegetationsk, 34: 1–519.
LapageS. P., Sneath, P. H. A., Lessel, E. F., Skerman, V. B. D., Seelinger, H. P. R. and Clark, W. A. (1992). International code of nomenclature of bacteria (1990 revision). Washington D.C.: American Society for Microbiology Press.
May, R. M. M. (1988). How many species are there on earth?Science, 241(4872): 1441–1449. DOI: 10.1126/science.241.4872.1441.
McNeill, J., Barrie, F. R., Buck, W. R., Demoulin, V., Greuter, W., Hawksworth, D. L., Herendeen, P. S., Knapp, S., Marhold, K., Prado, J., Prud’Homme. W. F., Smith, G. F., Weirsema, J. H. and Turland, N. J. (2012). International code of nomenclature for algae, fungi, and plants (Melbourne code). Regnum Vegetabile, 154. Koeningstein: Koeltz Scientific Books.
Patterson, D. J., Remsen, D., Marino, W. A. and Norton, C. (2006). Taxonomic indexing – extending the role of taxonomy. Systematic Biology, 55: 367–373.
Pullan, M. R., Watson, M. F., Kennedy, J. B., Raguenaud, C. and Hyam, R. (2000). The Prometheus taxonomic model: a practical approach to representing multiple classifications. Taxon, 49: 55–75.
Queiroz, K. (2006). The PhyloCode and the distinction between taxonomy and nomenclature. Systematic Biology, 55: 160–2.
Ride, W. D. L., Cogger, H. G., Dupuis, C., Kraus, O., Minelli, A., Thompson, F. C. and Tubbs, P. K. (1999). International code of zoological nomenclature, Fourth Edition. London: International Trust for Zoological Nomenclature.

References

Akerman, R. (2006). Evolving peer review for the internet. Nature (online edition). DOI: 10.1038/nature04997.
Anonymous (2006). Peer review and fraud. Nature, 444: 971–972.
Atkins, D., Borgman, C., Bindoff, N., et al. (2010). Building a UK Foundation for the transformative enhancement of research and innovation. Report of the International Panel for the 2009 Review of the UK Research Councils e-Science Programme. London: Research Council.
Benkler, Y. (2006). The wealth of networks, New Haven, CT: Yale University Press.
Bourne, P. (2005). Will a biological database be different from a biological journal?PLoS Computational Biology, 1: e34.
Boyle, J. (2009). The public domain: enclosing the commons of the mind. New Haven, CT: Yale University Press.
Brown, D. J. (2008). The impact of electronic publishing: the future for libraries and publishers. München: K G Saur Verlag.
Clark, T., Martin, S. and Liefeld, T. (2004). Globally distributed object identification for biological knowledge bases. Briefings in Bioinformatics, 5: 59–70.
Constable, H., Guralnick, R., Wieczorek, J., Spencer, C. and Peterson, A. T. (2010). VertNet: a new model for biodiversity data sharing. PLoS Biology, 8: e1000309.
Dallwitz, M. J. (1980). A general system for coding taxonomic descriptions. Taxon, 29: 41–46.
DCMS-and-BIS (2009). Digital Britain. London: The Stationery Office.
Duckworth, W. D., Genoways, H. H. and Rose, C. L. (1993). Preserving natural science collections: chronicle of our environmental heritage. Washington D.C.: National Institute for the Conservation of Cultural Property.
Electronic Publishing Services and Oppenheim, C. (2006). 2006 baseline report: an evidence-based analysis of data concerning scholarly journal publishing. Research Information Network, Research Councils UK and the Department of Trade and Industry. Available at: http://www.rin.ac.uk/our-work/communicating-and-disseminating-research/uk-scholarly-journals-2006-baseline-report.
GBIF-Statistics (2010). GBIF statistics. Accessed 1 March 2010 from http://vocabularies.gbif.org.
Ginsparg, P. (2008). The global-village pioneers. Physics World, October 2008: 22–26.
Godfray, H. C. J., Clark, B. R., Kitching, I. J., Mayo, S. J. and Scoble, M. J. (2007). The web and the structure of taxonomy. Systematic Biology, 56: 943–955.
Grayson, L. (2002). Evidence based policy and the quality of evidence: rethinking peer review. London: ESRC UK Centre for Evidence Based Policy and Practice.
Hall, M. B. (2002). Henry Oldenburg: shaping the Royal Society. Oxford: Oxford University Press.
Hanken, J. (2010). The Encyclopedia of Life: a new digital resource for taxonomy. In Systema naturae 250 – the Linnaean ark, A. Polaszek (ed). Boca Raton, FL: CRC Press, pp. 127–135.
Harling, P. and Bisby, F. (2004). Species 2000 Europa IPR licence and access agreements. Reading: The University of Reading.
Hull, D. L. (1991). Science as a process: an evolutionary account of the social and conceptual development of science. Chicago, IL: University of Chicago Press.
IWGSC (2008). Mission-critical infrastructure for federal science agencies. A report by the Interagency Working Group on Scientific Collections. Washington D.C.: National Science and Technology Council.
Jefferson, T. (2006). Models of quality control for scientific research. Nature (online edition). DOI: 10.1038/nature05031.
Johnson, N. F. (2010). Future taxonomy today: new tools applied to accelerate the taxonomic process. In Systema naturae 250 – the Linnaean ark, A. Polaszek (ed). Boca Raton, FL: CRC Press, pp. 137–147.
Krishtalka, L. and Humphrey, P. S. (2000). Can natural history museums capture the future?BioScience, 50: 611–617.
Lessig, L. (2008). Remix – making art and commerce thrive in the hybrid economy. New York, NY: Penguin.
Merton, R. (1942). Science and technology in a democratic order. Journal of Legal and Political Sociology, 1: 115–126.
Nentwich, M. (2006). Cyberinfrastructure for next generation scholarly publishing. In New infrastructures for knowledge production, C. M. Hine (ed.). London: Information Science Publishing, pp. 189–205.
Page, L., Brin, S., Motwani, R. and Winograd, T. (1999). The PageRank citation ranking: bringing order to the Web. Technical report. Stanford, CA: Stanford InfoLab.
Page, R. D. M. (2008). Biodiversity informatics: the challenge of linking data and the role of shared identifiers. Briefings in Bioinformatics, 9: 345–354.
Penev, L., Erwin, T., Miller, J., et al. (2009). Publication and dissemination of datasets in taxonomy: ZooKeys working example. ZooKeys, 11: 1–8.
Procter, R., Williams, R. and Steward, J. (2010). Use and relevance of Web 2.0 resources for researchers. London: Research Information Network.
Pruitt, K. D., Tatusova, T., Klimke, W. and Maglott, D. R. (2009). NCBI reference sequences: current status, policy and new initiatives. Nucleic Acids Research, 37: D32–6.
Rinaldo, C. (2009). The Biodiversity Heritage Library: exposing the taxonomic literature. Journal of Agricultural and Food Information, 10: 259–265.
Smith, V. S., Rycroft, S. D., Harman, K. T., Scott, B. and Roberts, D. (2009). Scratchpads: a data-publishing framework to build, share and manage information on the diversity of life. BMC Bioinformatics, 10(Suppl. 14): S6. DOI: 10.1186/1471-2105-10-S14-S6.
TDWG-Statistics (2010). TDWG biodiversity information projects of the world. Accessed 1 March 2010 from http://www.tdwg.org/about-tdwg.
Velterop, J. (2004). Open Access: science publishing as science publishing should be. Serials Review, 30: 308–309.
Walter, D. E. and Winterton, S. (2007). Keys and the crisis in taxonomy: extinction or reinvention?Annual Review of Entomology, 52: 193–208.

References

Adamski, D., Copeland, R. S., Miller, S. E., Hebert, P. D. N., Darrow, K. and Luke, Q. (2010). A review of African Blastobasinae (Lepidoptera: Gelechioidea: Coleophoridae), with new taxa reared from native fruits in Kenya. Smithsonian Contributions to Zoology, 630: vi + 68.
Azpurua, J., De La Cruz, D., Valderama, A. and Windsor, D. (2010). Lutzomyia Sand Fly diversity and rates of infection by Wolbachia and an exotic Leishmania species on Barro Colorado Island, Panama. PLoS Neglected Tropical Diseases, 4(3): e627.
Baird, D. J. and Hajibabaei, M. (2012). Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing. Molecular Ecology, 21: 2039–2044.
Basset, Y., Novotny, V., Miller, S. E. and Pyle, R. (2000). Quantifying biodiversity: experience with parataxonomists and digital photography in Papua New Guinea and Guyana. BioScience, 50: 899–908.
Basset, Y., Novotny, V., Miller, S. E., Weiblen, G. D., Missa, O. and Stewart, A. J. A. (2004). Conservation and biological monitoring of tropical forests: the role of parataxonomists. Journal of Applied Ecology, 41: 163–174.
Benson, D. A., Karsch-Mizrachi, I., Clark, K., Lipman, D. J., Ostell, J. and Sayers, E. W. (2012). GenBank. Nucleic Acids Research, 40(D1): D48–D53.
Bohmann, K., Monadjem, A., Lehmkuhl Noer, C., Rasmussen, M., Seale, M. R., Clare, E., Jones, G., Willerslev, E. and Gilbert, M. T. (2011). Molecular diet analysis of two African free-tailed bats (Molossidae) using high throughput sequencing. PloS ONE, 6(6): e21441.
Boykin, L. M., Armstrong, K. F., Kubatko, L. and De Barro, P. (2012). Species delimitation and global biosecurity. Evolutionary Bioinformatics Online, 8: 1–37.
Casiraghi, M., Labra, M., Ferri, E., Galimberti, A. and De Mattia, F. (2010). DNA barcoding: a six-question tour to improve users’ awareness about the method. Briefings in Bioinformatics, 11: 440–453.
Clare, E. L., Barber, B. R., Sweeney, B. W., Hebert, P. D. N. and Fenton, M. B. (2011). Eating local: influences of habitat on the diet of little brown bats (Myotis lucifugus). Molecular Ecology, 20: 1772–1780.
Costion, C., Ford, A., Cross, H., Crayn, D., Harrington, M. and Lowe, A. (2011). Plant DNA barcodes can accurately estimate species richness in poorly known floras. PloS ONE, 6(11): e26841.
Craft, K. J., Pauls, S. U., Darrow, K., Miller, S. E., Hebert, P. D. N., Helgen, L. E., Novotny, V. and Weiblen, G. D. (2010). Population genetics of ecological communities with DNA barcodes: an example from New Guinea Lepidoptera. Proceedings of the National Academy of Science U S A, 107: 5041–5046.
Crawford, A. J., Lips, K. R. and Bermingham, E. (2010). Epidemic disease decimates amphibian abundance, species diversity, and evolutionary history in the highlands of central Panama. Proceedings of the National Academy of Sciences U S A, 107: 13777–13782.
de Waard, J. R., Landry, J. F., Schmidt, B. C., Derhousoff, J., McLean, J. A. and Humble, L. M. (2009). In the dark in a large urban park: DNA barcodes illuminate cryptic and introduced moth species. Biodiversity and Conservation, 18: 3825–3839.
de Waard, J. R., Mitchell, A., Keena, M. A., Gopurenko, D., Boykin, L. M., Armstrong, K. F., Pogue, M. G., Lima, J., Floyd, R., Hanner, R. M. and Humble, L. M. (2010). Towards a global barcode library for Lymantria (Lepidoptera: Lymantriinae) tussock moths of biosecurity concern. PLoS ONE, 5(12): e14280.
Dick, C. W. and Webb, C. O. (2012). Plant DNA barcodes, taxonomic management, and species discovery in tropical forests. In DNA barcodes: methods and protocols, W. J. Kress and D. L. Erickson (eds). New York, NY: Springer, pp. 379–393.
Dinca, V., Zakharov, E. V., Hebert, P. D. N. and Vila, R. (2011). Complete DNA barcode reference library for a country’s butterfly fauna reveals high performance for temperate Europe. Proceedings of the Royal Society B, 278: 347–355.
Emerson, B. C., Cicconardi, F., Fanciulli, P. P. and Shaw, P. J. (2011). Phylogeny, phylogeography, phylobetadiversity and the molecular analysis of biological communities. Philosophical Transactions of the Royal Society of London B, 366: 2391–2402.
Fernandez-Triana, J., Smith, M. A., Boudreault, C., Goulet, H., Hebert, P. D. N., Smith, A. C. and Roughley, R. (2011). A poorly known high-latitude parasitoid wasp community: unexpected diversity and dramatic changes through time. PloS ONE, 6(8): e23719.
Ficetola, G. F., Miaud, C., Pompanon, F. and Taberlet, P. (2008). Species detection using environmental DNA from water samples. Biology Letters, 4: 423–425.
Floyd, R., Lima, J., de Waard, J., Humble, L. and Hanner, R. (2010). Common goals: policy implications of DNA barcoding as a protocol for identification of arthropod pests. Biological Invasions, 12: 2947–2954.
Folmer, O., Black, M., Hoeh, W., Lutz, R. and Vrijenhoek, R. (1994). DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3: 294–299.
Francis, C. M., Borisenko, A. V, Ivanova, N. V., Eger, J. L., Lim, B. K., Guillen-Servent, A., Kruskop, S. V., Mackie, I. and Hebert, P. D. N. (2010). The role of DNA barcodes in understanding and conservation of mammal diversity in Southeast Asia. PLoS ONE, 5(9): e12575.
Gariepy, T. D., Lindsay, R., Ogden, N. and Gregory, T. R. (2012). Identifying the last supper: utility of the DNA barcode library for bloodmeal identification in ticks. Molecular Ecology Resources, 12: 646–652.
Gibson, C. M., Kao, R. H., Blevins, K. K. and Travers, P. D. (2012). Integrative taxonomy for continental-scale terrestrial insect observations. PLoS ONE, 7(5): e37528.
Goetze, E. (2010). Species discovery in marine planktonic invertebrates through global molecular screening. Molecular Ecology, 19: 952–967.
Greenstone, M. H., Rowley, D. L., Heimbach, U., Lundgren, J. G., Pfannenstiel and R. S., Rehner, S. A. (2005). Barcoding generalist predators by polymerase chain reaction: carabids and spiders. Molecular Ecology, 14: 3247–3266.
Hajibabaei, M., Shokralla, S., Zhou, X., Singer, G. A. and Baird, D. J. (2011). Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos. PLoS ONE, 6(4): e17497.
Hausmann, A., Haszprunar, G., Segerer, A. H., Speidel, W., Behounek, G. and Hebert, P. D. N. (2011). Now DNA-barcoded: the butterflies and larger moths of Germany. Spixiana, 34: 47–58.
Hebert, P. D. N, Cywinska, A., Ball, S. L. and de Waard, J. R. (2003). Biological identifications through DNA barcodes. Proceedings of the Royal Society B, 270: 313–321.
Hebert, P. D. N., de Waard, R. J. and Landry, J. F. (2010). DNA barcodes for 1/1000 of the animal kingdom. Biology Letters, 6: 359–362.
Heimeier, D., Lavery, S. and Sewell, M. A. (2010). Using DNA barcoding and phylogenetics to identify Antarctic invertebrate larvae: lessons from a large scale study. Marine Genomics, 3: 165–177.
Hollingsworth, P. M., Forrest, L. L., Spouge, J. L., Hajibabaei, M., Ratnasingham, S., van der Bank, M., Chase, M. W., Cowan, R. S., Erickson, D. L., Fazekas, A. J., Graham, S. W., James, K. E., et al. (2009). A DNA barcode for land plants. Proceedings of the National Academy of Sciences U S A, 106: 12794–12797.
Holloway, J. D. (2011). The moths of Borneo: Families Phaudidae, Himantopteridae and Zygaenidae; revised and annotated checklist. Malayan Nature Journal, 63: 1–548.
Holloway, J. D., Miller, S. E., Pollock, D. M., Helgen, L. and Darrow, K. (2009). GONGED (Geometridae of New Guinea Electronic Database): a progress report on development of an online facility of images. Spixiana, 32: 122.
Hrcek, J., Miller, S. E., Quicke, D. L. J. and Smith, M. A. (2011). Molecular detection of trophic links in a complex insect host–parasitoid food web. Molecular Ecology Resources, 11: 786–794.
Hubert, N., Delrieu-Trottin, E., Irisson, J. O., Meyer, C. and Planes, S. (2010). Identifying coral reef fish larvae through DNA barcoding: a test case with the families Acanthuridae and Holocentridae. Molecular Phylogenetics and Evolution, 55: 1195–1203.
Hulcr, J., Miller, S. E, Setliff, G. P., Darrow, K., Mueller, N. D., Hebert, P. D. N., Weiblen, G. D. (2007). DNA barcoding confirms polyphagy in a generalist moth, Homona mermerodes (Lepidoptera: Tortricidae). Molecular Ecology Notes, 7: 549–557.
Janzen, D. H., Hallwachs, W., Blandin, P., Burns, J. M., Cadiou, J. M., Chacon, I., Dapkey, T., Deans, A. R., Epstein, M., Espinoza, B., Franclemont, J., Haber, W., et al. (2009). Integration of DNA barcoding into an ongoing inventory of complex tropical biodiversity. Molecular Ecology Resources, 9 (Suppl 1): 1–26.
Janzen, D. H. and Hallwachs, W. (2011a). Joining inventory by parataxonomists with DNA Barcoding of a large complex tropical conserved wildland in Northwestern Costa Rica. PLoS ONE, 6(8): e18123.
Janzen, D. H, Hallwachs, W., Burns, J. M., Hajibabaei, M., Bertrand, C., Hebert, P. D. N. (2011b). Reading the complex Skipper butterfly fauna of one tropical place. PLoS ONE, 6(8): e19874.
Jones, F. A., Erickson, D. L., Bernal, M. A, Bermingham, E., Kress, W. J., Herre, E. A., Muller-Landau, H. C. and Turner, B. L. (2011). The roots of diversity: below ground species richness and rooting distributions in a tropical forest revealed by DNA barcodes and inverse modeling. PLoS ONE, 6(9): e24506.
Jones, F. C. (2008). Taxonomic sufficiency: the influence of taxonomic resolution on freshwater bioassessments using benthic macroinvertebrates. Environmental Reviews, 16: 45–69.
Jurado-Rivera, J. A., Vogler, A. P., Reid, C. A. M., Petitpierre, E. and Gómez-Zurita, J. (2009). DNA barcoding insect–host plant associations. Proceedings of the Royal Society B, 276: 639–648.
Kaartinen, R., Stone, G. N., Hearn, J., Lohse, K. and Roslin, T. (2010). Revealing secret liaisons: DNA barcoding changes our understanding of food webs. Ecological Entomology, 35: 623–638.
Kato, T., Jinbo, U. and Ito, M. (2012). DNA barcoding: a novel tool for observation of biodiversity. In The biodiversity observation network in the Asia–Pacific region: toward further development of monitoring, S.-I. Nakano (ed.). Japan: Springer, pp. 259–266.
Kress, W. J., Erickson, D. L., Jones, F. A., Swenson, N. G., Perez, R., Sanjur, O. and Bermingham, E. (2009). Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama. Proceedings of the National Academy of Science U S A, 106: 18621–18626.
Kress, W. J., Erickson, D. L., Swenson, N. G., Thompson, J., Uriarte, M. and Zimmerman, J. K. (2010). Advances in the use of DNA barcodes to build a community phylogeny for tropical trees in a Puerto Rican forest Dynamics Plot. PLoS ONE, 5(11): e15409.
Kress, W. J., Lopez, I. C. and Erickson, D. L. (2012). Generating plant DNA barcodes for trees in long-term forest Dynamics Plots. In DNA barcodes: methods and protocols, W. J. Kress and D. L. Erickson (eds). New York: Springer, pp. 441–458.
Krüger, A., Strüven, L., Post, R. L. and Faulde, M. (2011). The sandflies (Diptera: Psychodidae, Phlebotominae) in military camps in northern Afghanistan (2007–2009), as identified by morphology and DNA ‘barcoding’. Annals of Tropical Medicine and Parasitology, 105: 163–176.
Laforest, B. J., Winegardner, A. K., Zaheer, O. A., Jeffery, N. W., Boyle, E. E. and Adamowicz, S. J. (2013). Insights into biodiversity sampling strategies for freshwater microinvertebrate faunas through bioblitz campaigns and DNA barcoding. BMC Ecology, 13(1): 13.
Lafrankie, J. V., Davies, S. J., Wang, L. K., Lee, S. K and Lum, S. K. Y. (2005). Forest trees of Bukit Timah: population ecology in a tropical forest fragment. Singapore: Simply Green.
Lees, D. C., Rougerie, R., Zeller-Lukashort, C. and Kristensen, N. P. (2010). DNA mini-barcodes in taxonomic assignment: a morphologically unique new homoneurous moth clade from the Indian Himalayas described in Micropterix (Lepidoptera, Micropterigidae). Zoologica Scripta, 39: 642–661.
Leponce, M., Meyer, C., Haeuser, C. L., Bouchet, P., Delabie, J. H. C., Weigt, L. and Basset, Y. (2010). Challenges and solutions for planning and implementing large-scale biotic inventories. In Manual on field recording techniques and protocols for all taxa biodiversity inventories and monitoring, J. Eymann, J. Degreef, C. Häuser, J. C. Monje, Y. Samyn and D. VandenSpiegel (eds). Brussels: Belgian Development Cooperation, pp. 18–48.
Lowenstein, J. H., Osmundson, T. W., Becker, S., Hanner, R. and Stiassny, M. L. (2011). Incorporating DNA barcodes into a multi-year inventory of the fishes of the hyperdiverse Lower Congo River, with a multi-gene performance assessment of the genus Labeo as a case study. Mitochondrial DNA, 22 (Suppl 1): 52–70.
Meusnier, I., Singer, G. A. C., Landry, J. F., Hickey, D. A., Hebert, P. D. N. and Hajibabaei, M. (2008). A universal DNA mini-barcode for biodiversity analysis. BMC Genomics, 9: 214.
Miller, S. E. (2007). DNA barcoding and the renaissance of taxonomy. Proceedings of the National Academy of Science U S A, 104: 4775–4776.
Miller, S. E., Novotny, V. and Basset, Y. (2003). Studies on New Guinea moths. 1. Introduction (Lepidoptera). Proceedings of the Entomological Society of Washington, 105: 1035–1043.
Miller, S. E., Helgen, L. E. and Hebert, P. D. N. (2010). Clarification of the identity of Homona salaconis (Lepidoptera: Tortricidae). Molecular Ecology Resources, 10: 580.
Miller, S. E., Hrcek, J., Novotny, V., Weiblen, G. D. and Hebert, P. D. N. (2013). DNA barcodes of caterpillars (Lepidoptera) from Papua New Guinea. Proceedings of the Entomological Society of Washington, 115: 107–109.
Newmaster, S. G. and Ragupathy, S. (2010). Ethnobotany genomics – discovery and innovation in a new era of exploratory research. Journal of Ethnobiology and Ethnomedicine, 6: 2.
Novotny, V., Miller, S. E., Hrcek, J., Baje, L., Basset, Y., Lewis, O. T., Stewart, A. J. A. and Weiblen, G. D. (2012). Insects on plants: explaining the paradox of low diversity within specialist herbivore guilds. American Naturalist, 179: 351–362.
Nzeduru, C. V., Ronca, S. and Wilkinson, M. J. (2012). DNA barcoding simplifies environmental risk assessment of genetically modified crops in biodiverse regions. PLoS ONE, 7(5): e35929.
Pfrender, M. E., Hawkins, C. P., Bagley, M., Courtney, G. W., Creutzburg, B. R., Epler, J. H., Fend, S., Schindel, D., Ferrington, L. C. Jr, Hartzell, P. L., Jackson, S., Larsen, D. P., et al. (2010). Assessing macroinvertebrate biodiversity in freshwater ecosystems: advances and challenges in DNA-based approaches. Quarterly Review of Biology, 85: 319–340.
Pinzón-Navarro, S., Barrios, H., Múrria, C., Lyal, C. H. C. and Vogler, A. P. (2010a). DNA-based taxonomy of larval stages reveals huge unknown species diversity in Neotropical seed weevils (genus Conotrachelus): relevance to evolutionary ecology. Molecular Phylogenetics and Evolution, 56: 281–293.
Pinzón-Navarro, S., Jurado-Rivera, J. A., Gomez-Zurita, J., Lyal, C. H. C. and Vogler, A. P. (2010b). DNA profiling of host–herbivore interactions in tropical forests. Systematic Entomology, 35 (Suppl 1): 18–32.
Plaisance, L., Caley, M. J., Brainard, R. E. and Knowlton, N. (2011). The diversity of coral reefs: what are we missing?PLoS ONE, 6(10): e25026.
Pompanon, F., Deagle, B. E., Symondson, W. O. C., Brown, D. S., Jarman, S. N. and Taberlet, P. (2012). Who is eating what: diet assessment using next generation sequencing. Molecular Ecology, 21: 1931–1950.
Puillandre, N., Bouchet, P., Boisselier-Dubayle, M. C., Brisset, J., Buge, B., Castelin, M., Chagnoux, S., Christophe, T., Corbari, L., Lambourdière, J., Lozouet, P., Marani, G., et al. (2012). New taxonomy and old collections: integrating DNA barcoding into the collection curation process. Molecular Ecology Resources, 12: 396–402.
Ranasinghe, J. A., Stein, E. D., Miller, P. E. and Weisberg, S. B. (2012). Performance of two southern California benthic community condition indices using species abundance and presence-only data: relevance to DNA barcoding. PLoS ONE, 7(8): e40875.
Ratnasingham, S. and Hebert, P. D. N. (2007). BOLD: the barcode of life data system (http://www.barcodinglife.org). Molecular Ecology Notes, 7: 355–364.
Ratnasingham, S. and Hebert, P. D. N. (2013). A DNA-based registry for all animal species: the barcode index number (BIN) system. PloS ONE, 8(7): e66213.
Richard, B., Decaens, T., Rougerie, R., James, S. W., Porco, D. and Hebert, P. D. N. (2010). Re-integrating earthworm juveniles into soil biodiversity studies: species identification through DNA barcoding. Molecular Ecology Resources, 10: 606–614.
Roe, A. D., Stein, J. D., Gillette, N. E. and Sperling, F. A. H. (2006). Identification of Dioryctria (Lepidoptera: Pyralidae) in a seed orchard at Chico, California. Annals of the Entomological Society of America, 99: 433–448.
Rougerie, R., Smith, M. A., Fernandez-Triana, J., Lopez-Vaamonde, C., Ratnasingham, S. and Hebert, P. D. N. (2011). Molecular analysis of parasitoid linkages (MAPL): gut contents of adult parasitoid wasps reveal larval host. Molecular Ecology, 20: 179–186.
Schindel, D. E. (2010). Biology without borders. Nature, 467: 779–781.
Schindel, D. E. and Miller, S. E. (2010). Provisional nomenclature: the on-ramp to taxonomic names. In Systema naturae 250: the Linnaean ark, A. Polaszek (ed.). Boca Raton, FL: CRC Press, pp. 109–115.
Schoch, C. L., Seifert, K. A., Huhndorf, S., Robert, V., Spouge, J. L., Levesque, C. A., Chen, W. and the Fungal Barcoding Consortium. (2012). Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Science U S A, 109: 6241–6246.
Shokralla, S., SingerG. A. C. and Hajibabaei, M. (2010). Direct PCR amplification and sequencing of specimens’ DNA from preservative ethanol. BioTechniques, 48: 233–234.
Smith, M. A. and Fisher, B. L. (2009). Invasions, DNA barcodes, and rapid biodiversity assessment using ants of Mauritius. Frontiers in Zoology, 6(1): 31.
Smith, M. A., Bertrand, C., Crosby, K., Eveleigh, E. S., Fernandez-Triana, J., Fisher, B. L., Gibbs, J., Hajibabeaei, M., Hallwachs, W., Hind, K., Hrcek, J., Huang, D.-W., et al. (2012). Wolbachia and DNA barcoding insects: patterns, potential and problems. PloS ONE, 7(5): e36514.
Stern, R. F., Horak, A., Andrew, R. L., Coffroth, M. A., Andersen, R. A., Küpper, F. C., Jameson, I., Hoppenrath, M., Véron, B., Kasai, F., Brand, J., James, E. R. et al. (2010). Environmental barcoding reveals massive dinoflagellate diversity in marine environments. PLoS ONE, 5(11): e13991.
Strutzenberger, P., Brehm, G. and Fiedler, K. (2010). DNA barcoding-based species delimitation increases species count of Eois (Geometridae) moths in a well-studied tropical mountain forest by up to 50%. Insect Science, 18: 349–362.
Swartz, E. R., Mwale, M., Hanner, R. (2008). A role for barcoding in the study of African fish diversity and conservation. South African Journal of Science, 104: 293–298.
Tänzler, R., Sagata, K., Surbakti, S., Balke, M. and Riedel, A. (2012). DNA barcoding for community ecology – how to tackle a hyperdiverse, mostly undescribed Melanesian fauna. PLoS ONE, 7(1): e28832.
Teletchea, F. (2010). After 7 years and 1000 citations: Comparative assessment of the DNA barcoding and the DNA taxonomy proposals for taxonomists and non-taxonomists. Mitochondrial DNA, 21: 206–226.
Valdez-Moreno, M., Quintal-Lizama, C., Gómez-Lozano, R. and García-Rivas, M.delC. (2012). Monitoring an alien invasion: DNA barcoding and the identification of lionfish and their prey on coral reefs of the Mexican Caribbean. PLoS ONE, 7(6): e36636.
Valentini, A.Pompanon, F. and Taberlet, P. (2008). DNA barcoding for ecologists. Trends in Ecology and Evolution, 24: 110–117.
Waugh, J. (2007). DNA barcoding in animal species: progress, potential and pitfalls. BioEssays, 29: 188–197.
Wilson, J. J. (2012). DNA barcodes for insects. In DNA barcodes: methods and protocols, W. J. Kress and D. L. Erickson (eds). New York, NY: Springer, pp. 17–46.
Zhou, X., Adamowicz, S. J., Jacobus, L. M., Dewalt, R. E. and Hebert, P. D. N. (2009). Towards a comprehensive barcode library for arctic life – Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada. Frontiers in Zoology, 6(1): 30.