Skip to main content Accessibility help
  • Get access
    Check if you have access via personal or institutional login
  • Cited by 13
  • Print publication year: 2012
  • Online publication date: August 2012

8 - Historical biogeography inference in Malesia


Ackerly, D. D. (2000). Taxon sampling, correlated evolution, and independent contrasts. Evolution, 54, 1480–92.
Baker, W. J., Coode, M. J. E., Dransfield, J. et al. (1998). Patterns of distribution of Malesian vascular plants. In Biogeography and Geological Evolution of SE Asia, ed. R. Hall and J. D. Holloway. Leiden, The Netherlands: Backhuys Publishers, pp. 243–58.
Barker, N. P., Weston, P. H., Rutschmann, F. and Sauquet, H. (2007). Molecular dating of the ‘Gondwanan’ plant family Proteaceae is only partially congruent with the timing of the break-up of Gondwana. Journal of Biogeography, 34, 2012–27.
Brown, G., Craven, L., Udovicic, F. and Ladiges, P. (2006a). Phylogeny of Rhododendron section Vireya (Ericaceae) based on two non-coding regions of cpDNA. Plant Systematics and Evolution, 257, 57–93.
Brown, G. K., Nelson, G. and Ladiges, P. Y. (2006b). Historical biogeography of Rhododendron section Vireya and the Malesian Archipelago. Journal of Biogeography, 33, 1929–44.
Colwell, R. K. and Winkler, D. W. (1984). A null model for null models in biogeography. In Ecological Communities: Conceptual Issues and the Evidence, ed. D. R. Strong, D. Simberloff, L. G. Abele and A. B. Thistle. Princeton, NJ: Princeton University Press, pp. 344–59.
Crisp, M. D., Linder, H. P. and Weston, P. H. (1995). Cladistic biogeography of plants in Australia and New Guinea: congruent pattern reveals two endemic tropical tracks. Systematic Biology, 44, 457–73.
Crisp, M. D., Cook, L. and Steane, D. (2004). Radiation of the Australian flora: what can comparisons of molecular phylogenies across multiple taxa tell us about the evolution of diversity in present-day communities? Proceedings of the Royal Society of London, Series B: Biological Sciences, 359, 1551–71.
Crisp, M. D., Isagi, Y., Kato, Y., Cook, L. G. and Bowman, D. M. J. S. (2010). Livistona palms in Australia: ancient relics or opportunistic immigrants? Molecular Phylogenetics and Evolution, 54, 512–523.
Croizat, L. (1958). Panbiogeography. Caracas: Published by the author.
Edgar, R. C. (2004). MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics, 5, 113.
Evans, B. J., Brown, R. M., McGuire, J. A. et al. (2003). Phylogenetics of fanged frogs: testing biogeographical hypotheses at the interface of the Asian and Australian faunal zones. Systematic Biology, 52, 794–819.
Gilpin, M. E. and Diamond, J. M. (1976). Calculation of immigration and extinction curves from the species–area–distance relation. Proceedings of the National Academy of Sciences of the USA, 73, 4130–4.
Goetsch, L., Eckert, A. J. and Hall, B. D. (2005). The molecular systematics of Rhododendron (Ericaceae): a phylogeny based upon RPB2 gene sequences. Systematic Botany, 30, 616–26.
Hall, R. (1998). The plate tectonics of Cenozoic SE Asia and the distribution of land and sea. In Biogeography and Geological Evolution of SE Asia, ed. R. Hall, R. and J. D. Holloway. Leiden, The Netherlands: Backhuys Publishers, pp. 99–131.
Hall, R. (2001). Cenozoic reconstructions of SE Asia and the SW Pacific: changing patterns of land and sea. In Faunal and Floral Migrations and Evolution in SE Asia- Australasia, ed. I. Metcalfe, J. M. B. Smith, M. Morwood and I. D. Davidson. Lisse, The Netherlands: A. A. Balkerma (Swets and Zeitlinger Publishers), pp. 35–56.
Hall, R. (2009). Southeast Asia’s changing palaeogeography. Blumea, 54, 148–61.
Hardy, C. R. and Linder, H. P. (2005). Intraspecific variability and timing in ancestral ecology reconstruction: a test case from the Cape Flora. Systematic Biology, 54, 299–316.
Haydon, D., Radtkey, R. R. and Pianka, E. R. (1994). Experimental biogeography: interactions between stochastic, historical, and ecological processes in a model archipelago. In Species Diversity in Ecological Communities: Historical and Geographical Perspectives I, ed. R. E. Ricklefs and D. Schluter. Chicago: University of Chicago Press, pp. 117–30.
Heads, M. (2003). Ericaceae in Malesia: vicariance biogeography, terrane tectonics and ecology. Telopea, 10, 311–449.
Holloway, J. D. (1998). Geological signal and dispersal noise in two contrasting insect groups in the Indo-Australian tropics: R-mode analysis of pattern in Lepidoptera and cicadas. In Biogeography and Geological Evolution of SE Asia, ed. R. Hall and J. D. Holloway. Leiden, The Netherlands: Backhuys Publishers, pp. 291–314.
Honda, M., Ota, H., Murphy, R. W. and Hikida, T. (2006). Phylogeny and biogeography of water skinks of the genus Tropidophorus (Reptilia: Scincidae): a molecular approach. Zoologica Scripta, 35, 85–95.
Irving, E. and Hebda, R. (1993). Concerning the origin and distribution of rhododendrons. Journal of the American Rhododendron Society, 47, 139–62.
Jønsson, K. A., Bowie, R. C. K., Moyle, R. G. et al. (2010). Historical biogeography of an Indo-Pacific passerine bird family (Pachycephalidae): different colonization patterns in the Indonesian and Melanesian archipelagos. Journal of Biogeography, 37, 245–57.
Keppel, G., Lowe, A. J. and Possingham, H. P. (2009). Changing perspectives on the biogeography of the tropical South Pacific: influences of dispersal, vicariance and extinction. Journal of Biogeography, 36, 1035–1054.
Kodandaramaiah, U. (2010). Use of dispersal–vicariance analysis in biogeography: a critique. Journal of Biogeography, 37, 3–11.
Kreier, H.-P. and Schneider, H. (2006). Phylogeny and biogeography of the staghorn fern genus Platycerium (Polypodiaceae, Polypodiidae). American Journal of Botany, 93, 217–25.
Ladiges, P. Y., Udovicic, F. and Nelson, G. (2003). Australian biogeographical connections and the phylogeny of large genera in the plant family Myrtaceae. Journal of Biogeography, 30, 989–98.
Lamm, K. S. and Redelings, B. D. (2009). Reconstructing ancestral ranges in historical biogeography: properties and prospects. Journal of Systematics and Evolution, 47, 369–82.
MacArthur, R. H., and Wilson, E. O. (1967). The Theory of Island Biogeography. Princeton, NJ: Princeton University Press.
Michaux, B. (1991). Distributional patterns and tectonic development in Indonesia: Wallace reinterpreted. Australian Systematic Botany, 4, 25–36.
Milne, R. I. (2004). Phylogeny and biogeography of Rhododendron subsection Pontica, a group with a tertiary relict distribution. Molecular Phylogenetics and Evolution, 33, 389–401.
Morley, R. J. (2000). Origin and Evolution of Tropical Rainforests. New York: Wiley.
Moyle, R. G. (2004). Calibration of molecular clocks and the biogeographic history of Crypteroniaceae. Evolution, 58, 1871–3.
Nelson, G. and Ladiges, P. Y. (1996). Paralogy in cladistic biogeography and analysis of paralogy-free subtrees. American Museum Novitates, 3167, 1–58.
Paradis, E. (2004). APE: analyses of phylogenetics and evolution in R language. Bioinformatics, 20, 289–90.
Pfeil, B. E. and Crisp, M. D. (2008). The age and biogeography of citrus and the orange subfamily (Rutaceae: Aurantioideae) in Australasia and New Caledonia. American Journal of Botany, 95, 1621–31.
Posadas, P., Crisci, J. V. and Katinas, L. (2006). Historical biogeography: a review of its basic concepts and critical issues. Journal of Arid Environments, 66, 389–403.
Ree, R. H. and Sanmartín, I. (2009). Prospects and challenges for parametric models in historical biogeographical inference. Journal of Biogeography, 36, 1211–20.
Ree, R. H. and Smith, S. A. (2008). Maximum-likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. Systematic Biology, 57, 4–14.
Ree, R. H., Moore, B. R., Webb, C. O. and Donoghue, M. J. (2005). A likelihood framework for inferring the evolution of geographic range on phylogenetic trees. Evolution, 59, 2299–311.
Richardson, J. E., Chatrou, L. W., Mols, J B., Erkens, R. H. J. and Pirie, M. D. (2004). Historical biogeography of two cosmopolitan families of flowering plants: Annonaceae and Rhamnaceae. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences, 359, 1495–508.
Ridder-Numan, J. W. A. (1998). Historical biogeography of Spatholobus (Leguminosae- Papilionoideae) and allies in SE Asia. In Biogeography and Geological Evolution of SE Asia, ed. R. Hall and J. D. Holloway. Leiden, The Netherlands: Backhuys Publishers, pp. 259–77.
Ronquist, F. (1997). Dispersal–vicariance analysis: a new approach to the quantification of historical biogeography. Systematic Biology, 46, 195–203.
Ruedi, M. (1996). Phylogenetic evolution and biogeography of southeast Asian shrews (genus Crocidura: Soricidae). Biological Journal of the Linnean Society, 58, 197219.
Sanmartín, I., van der Mark, P. and Ronquist, F. (2008). Inferring dispersal: a Bayesian approach to phylogeny-based island biogeography, with special reference to the Canary Islands. Journal of Biogeography, 35, 428–49.
Scharaschkin, T. and Doyle, J. A. (2005). Phylogeny and historical biogeography of Anaxagorea (Annonaceae) using morphology and non-coding chloroplast sequence data. Systematic Botany, 30, 712–35.
Simberloff, D. and Connor, E. F. (1979). Q-mode and R-mode analyses of biogeographic distributions: null hypotheses based on random colonization. In Contemporary Quantitative Ecology and Related Ecometrics, ed. G. P. Patil and M. L. Rosenzweig. Fairland, MD: International Co-operative Publishing House, pp. 123–38.
Stamatakis, A. (2006). RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22, 2688–90.
Stamatakis, A. and Ott, M. (2008). Efficient computation of the phylogenetic likelihood function on multi-gene alignments and multi-core architectures. Philosophical Transactions of the Royal Society B: Biological Sciences, 363, 3977–84.
Truswell, E. M., Kershaw, A. P. and Sluiter, I. R. (1984). The Australian-South-east Asian connection: evidence from the paleobotanical record. In Biogeographical Evolution of the Malay Archipelago, ed. T. C. Whitmore. Oxford: Clarendon Press, pp. 32–49.
Turner, H. (1996). Sapindaceae and the biogeography of Eastern Australia. Australian Systematic Botany, 8, 133–67.
van Balgooy, M. M. J. (1987). A plant geographical analysis of Sulawesi. In Biogeographical Evolution of the Malay Archipelago, ed.T. C. Whitmore. Oxford: Clarendon Press, pp. 94–102
van Welzen, P. C., Turner, H. and Hovenkamp, P. (2003). Historical biogeography of Southeast Asia and the West Pacific, or the generality of unrooted area networks as historical biogeographic hypotheses. Journal of Biogeography, 30, 181–92.
van Welzen, P. C., Slik, J. W. F. and Alahuhta, J. (2005). Plant distribution patterns and plate tectonics in Malesia. Biologiske skrifter, 55, 199–217.
Wallace, A. R. (1869). The Malay Archipelago. London: Macmillan and Co.
Webb, C. O., Slik, J. W. F. and Triono, T. (2010). Biodiversity inventory and informatics in Southeast Asia. Biodiversity and Conservation, 19, 955–972.