Skip to main content Accessibility help
×
Home
Hostname: page-component-768dbb666b-v9bzm Total loading time: 1.533 Render date: 2023-02-07T06:07:00.893Z Has data issue: true Feature Flags: { "useRatesEcommerce": false } hasContentIssue true

Chapter 1 - Introduction to prokaryotic metabolism and physiology

Published online by Cambridge University Press:  04 May 2019

Byung Hong Kim
Affiliation:
Korea Institute of Science and Technology, Seoul
Geoffrey Michael Gadd
Affiliation:
University of Dundee
Get access
Type
Chapter
Information
Publisher: Cambridge University Press
Print publication year: 2019

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Primary Sources

Downs, D. M. (2006). Understanding microbial metabolism. Annual Review of Microbiology 60, 533559.
Solden, L., Lloyd, K. & Wrighton, K. (2016). The bright side of microbial dark matter: lessons learned from the uncultivated majority. Current Opinion in Microbiology 31, 217226.

Secondary Sources

Achtman, M. & Wagner, M. (2008). Microbial diversity and the genetic nature of microbial species. Nature Reviews Microbiology 6, 431440.
Bertin, P. N., Medigue, C. & Normand, P. (2008). Advances in environmental genomics: towards an integrated view of micro-organisms and ecosystems. Microbiology 154, 347359.
Fernandez, L. A. (2005). Exploring prokaryotic diversity: there are other molecular worlds. Molecular Microbiology 55, 515.
Ehrlich, H. L., Newman, D. K. & Kappler, A. (2015). Ehrlich’s Geomicrobiology, 6th edn. Boca Raton, FL, USA: CRC Press.
Gadd, G. M., Semple, K. T. & Lappin-Scott, H. M. (2005). Micro-organisms and Earth Systems: Advances in Geomicrobiology. Cambridge: Cambridge University Press.
Konhauser, K. O. (2007). Introduction to Geomicrobiology. Malden, MA, USA: Blackwell Science Ltd.
Madsen, E. L. (2015). Environmental Microbiology: From Genomes to Biogeochemistry, 2nd edn. New York: Wiley.
Shively, J. M., English, R. S., Baker, S. H. & Cannon, G. C. (2001). Carbon cycling: the prokaryotic contribution. Current Opinion in Microbiology 4, 301306.
Vorholt, J. A. (2012). Microbial life in the phyllosphere. Nature Reviews Microbiology 10, 828840.
Boucher, Y., Douady, C. J., Papke, R. T., Walsh, D. A., Boudreau, M. E., Nesbo, C. L., Case, R. J. & Doolittle, W. F. (2003). Lateral gene transfer and the origins of prokaryotic groups. Annual Review of Genetics 37, 283328.
Boyd, E. F., Almagro-Moreno, S. & Parent, M. A. (2009). Genomic islands are dynamic, ancient integrative elements in bacterial evolution. Trends in Microbiology 17, 4753.
Koch, A. L. & Silver, S. (2005). The first cell. Advances in Microbial Physiology 50, 227259.
van der Meer, J. R. & Sentchilo, V. (2003). Genomic islands and the evolution of catabolic pathways in bacteria. Current Opinion in Biotechnology 14, 248254.
Chun, J. & Rainey, F. A. (2014). Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea. International Journal of Systematic and Evolutionary Microbiology 64, 316324.
Francke, C., Siezen, R. J. & Teusink, B. (2005). Reconstructing the metabolic network of a bacterium from its genome. Trends in Microbiology 13, 550558.
Loman, N. J. & Pallen, M. J. (2015). Twenty years of bacterial genome sequencing. Nature Reviews Microbiology 13, 787794.
Medini, D., Serruto, D., Parkhill, J., Relman, D. A., Donati, C., Moxon, R., Falkow, S. & Rappuoli, R. (2008). Microbiology in the post-genomic era. Nature Reviews Microbiology 6, 419430.
Ward, N. & Fraser, C. M. (2005). How genomics has affected the concept of microbiology. Current Opinion in Microbiology 8, 564571.
Bowers, K. & Wiegel, J. (2011). Temperature and pH optima of extremely halophilic archaea: a mini-review. Extremophiles 15, 119128.
Cowan, D. A. (2004). The upper temperature for life – where do we draw the line? Trends in Microbiology 12, 5860.
Javaux, E. J. (2006). Extreme life on Earth: past, present and possibly beyond. Research in Microbiology 157, 3748.
Bashan, A., Gibson, T. E., Friedman, J., Carey, V. J., Weiss, S. T., Hohmann, E. L. & Liu, Y.-Y. (2016). Universality of human microbial dynamics. Nature 534, 259262.
Bauer, K. C., Huus, K. E. & Finlay, B. B. (2016). Microbes and the mind: emerging hallmarks of the gut microbiota–brain axis. Cellular Microbiology 18, 632644.
Borody, T. J. & Khoruts, A. (2012). Fecal microbiota transplantation and emerging applications. Nature Reviews Gastroenterology and Hepatology 9, 8896.
Consortium, T. H. M. P. (2012). Structure, function and diversity of the healthy human microbiome. Nature 486, 207214.
Garrett, W. S. (2015). Cancer and the microbiota. Science 348, 8086.
Grice, E. A. & Segre, J. A. (2011). The skin microbiome. Nature Reviews Microbiology 9, 244253.
Hooper, L. V., Littman, D. R. & Macpherson, A. J. (2012). Interactions between the microbiota and the immune system. Science 336, 12681273.
O’Toole, P. W. & Jeffery, I. B. (2015). Gut microbiota and aging. Science 350, 12141215.
Sharon, G., Sampson, T. R., Geschwind, D. H. & Mazmanian, S. K. (2016). The central nervous system and the gut microbiome. Cell 167, 915932.
Sommer, F., Anderson, J. M., Bharti, R., Raes, J. & Rosenstiel, P. (2017). The resilience of the intestinal microbiota influences health and disease. Nature Reviews Microbiology 15, 630638.

Save book to Kindle

To save this book to your Kindle, first ensure coreplatform@cambridge.org is added to your Approved Personal Document E-mail List under your Personal Document Settings on the Manage Your Content and Devices page of your Amazon account. Then enter the ‘name’ part of your Kindle email address below. Find out more about saving to your Kindle.

Note you can select to save to either the @free.kindle.com or @kindle.com variations. ‘@free.kindle.com’ emails are free but can only be saved to your device when it is connected to wi-fi. ‘@kindle.com’ emails can be delivered even when you are not connected to wi-fi, but note that service fees apply.

Find out more about the Kindle Personal Document Service.

Available formats
×

Save book to Dropbox

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Dropbox.

Available formats
×

Save book to Google Drive

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Google Drive.

Available formats
×